PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G056000.1
Common NameB456_008G056000, LOC105763146
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 303aa    MW: 32983.4 Da    PI: 6.8627
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G056000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.41.7e-314107199
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C++lr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++q
  Gorai.008G056000.1   4 SCNGCRILRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQ 94 
                         6****************************************************************************************** PP

              DUF260  87 leqlkaelallke 99 
                         l+q+++e++l ++
  Gorai.008G056000.1  95 LCQAAVEAVLKGA 107
                         *******998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381552.8E-971301IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089117.1343109IPR004883Lateral organ boundaries, LOB
PfamPF031954.3E-254103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MRMSCNGCRI LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGAPIT PIASEAAANG  120
QGPPLKAYDI RHVSKDENSA ASNDVQRVKT RCRVKRTLKP KVNNPVLEEE NRSSEPPEPR  180
CYADEGFEGN RSTSHESSLS HQSELAVMDG ESKETESMIS EETVAASRLF PAEPEFGGKV  240
SEERTVEGSS EVGLELTLGF KPVMSRACQV VVPVKKRRVE AYGTFEDGQT CKVELGLDYP  300
AA*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012436713.10.0PREDICTED: LOB domain-containing protein 41
SwissprotQ9M8861e-113LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A0D2RA770.0A0A0D2RA77_GOSRA; Uncharacterized protein
STRINGGorai.008G056000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77212741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-106LOB domain-containing protein 41
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]