PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G055400.1
Common NameB456_008G055400, LOC105763140
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 247aa    MW: 27748.4 Da    PI: 6.6763
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G055400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.43e-09139186455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++iN+++  L++l+P +    +k +  a +Le+ ++Y++sLq
  Gorai.008G055400.1 139 SHSLAERVRREKINEKMRCLQDLVPGC----HKTMGMAVMLEEIINYVHSLQ 186
                         8*************************9....788*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-17133201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.24E-10133190No hitNo description
Gene3DG3DSA:4.10.280.102.3E-17135202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.364135185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-6139186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-9141191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MGDFTQHVQP MSEMEMTKQQ CSELNSTPME NFTIADLSLQ TLLAHQLPEF PPILSFTVLA  60
GGSPTATADE HVSLQTNKRK ATEQSTCKSQ IISPAASTTE FEGNTNTRKK NITLGKGKKA  120
KEAEEIIHVR ARRGQATDSH SLAERVRREK INEKMRCLQD LVPGCHKTMG MAVMLEEIIN  180
YVHSLQNQVE FLSMELAAAS SYVETQGNKM AQEGTNSHVP RQQQEMEKWA MDRYGEQHWF  240
HSTWPL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5811193e-42JX581119.1 Gossypium hirsutum clone NBRI_GE13684 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012436700.10.0PREDICTED: transcription factor BEE 3-like isoform X1
SwissprotQ8GWK71e-45BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A0D2TXU00.0A0A0D2TXU0_GOSRA; Uncharacterized protein
STRINGGorai.008G055400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17213810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.18e-46BR enhanced expression 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]