PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G053100.1 | ||||||||
Common Name | B456_008G053100, LOC105763111 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 263aa MW: 28909.1 Da PI: 6.6947 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.3 | 8.6e-11 | 147 | 194 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Gorai.008G053100.1 147 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 194 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.16E-18 | 141 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.22E-10 | 141 | 198 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.3E-18 | 143 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.828 | 143 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.7E-8 | 147 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-10 | 149 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MDPPAMMSDG RYNLAEIWQY PMSESGISRG QFGHGLAQFG DPSREVSGND PGSLEQQQRR 60 GGMRRRRDGE DETAKVVSTS STSSGNAVND GEGKRIKAAG GREQNHESRV EAEPSSGKLV 120 EEKAQPSEPP KQDYIHVRAR RGQATDSHSL AERARREKIS ERMKILQDLV PGCNKVIGKA 180 LVLDEIINYI QSLQRQVEFL SMKLEAVNSG INPAIEVFPR KDYGQQAFDA TGMAFGSQVI 240 REYSGGTSPE WLHIGSAFER TT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012436655.1 | 0.0 | PREDICTED: transcription factor BPE-like | ||||
Swissprot | Q69WS3 | 2e-76 | BH094_ORYSJ; Transcription factor BHLH094 | ||||
TrEMBL | A0A0D2TVN5 | 0.0 | A0A0D2TVN5_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A2P5SDT2 | 0.0 | A0A2P5SDT2_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.008G053100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1855 | 28 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59640.1 | 2e-87 | BIG PETAL P |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G053100.1 |
Entrez Gene | 105763111 |
Publications ? help Back to Top | |||
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