PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G044600.1
Common NameB456_008G044600
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 120aa    MW: 14146.5 Da    PI: 11.0204
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G044600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.71.5e-11489184
                        EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEE..E CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFk..l 84
                        f+k lt+ d  k  rl +p + +e++ g + +++  l+++d+s r W++ +++rk+s    v+++GW +F +  +L+ gD ++++  l
  Gorai.008G044600.1  4 FIKRLTKTDIEK--RLAIPTNSLEHFlGFNGRQGAYLKVKDRSHRLWTFWCSVRKTSYPkPVFSSGWLQFSHHYNLRIGDKITLRkqL 89
                        677776666555..59*******777*666668999***************8877776579**********************99333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.0E-15391IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-13386IPR015300DNA-binding pseudobarrel domain
PfamPF023622.2E-8489IPR003340B3 DNA binding domain
CDDcd100172.45E-15486No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MEVFIKRLTK TDIEKRLAIP TNSLEHFLGF NGRQGAYLKV KDRSHRLWTF WCSVRKTSYP  60
KPVFSSGWLQ FSHHYNLRIG DKITLRKQLK RDVSNGVQYK IEVQRKINLF GKDVWAHVL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021286448.15e-49AP2/ERF and B3 domain-containing transcription factor RAV1-like
TrEMBLA0A0D2PNN64e-83A0A0D2PNN6_GOSRA; Uncharacterized protein
TrEMBLA0A2P5QFX94e-83A0A2P5QFX9_GOSBA; Uncharacterized protein
STRINGGorai.008G044600.16e-84(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16093413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.15e-07RAV family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]