PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G036900.1
Common NameB456_008G036900
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 603aa    MW: 68140.2 Da    PI: 5.0403
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G036900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.22.2e-11341384755
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +Er+RR+++N+++  Lr+l+Pk +      Kl+ a+iL  A+e++k+L+
  Gorai.008G036900.1 341 VAERKRRKKLNERLYSLRSLVPKiS------KLDRASILGDAIEFVKELE 384
                         68*********************66......****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.7E-217153IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.77334383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.59E-11336388No hitNo description
SuperFamilySSF474591.31E-15338397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-14340389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-9341384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-15341397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MNIFQNLMER LRQVVGPKGW DYCVLWKLSD DQRFLEWVDC CCGGAESIES SGELQFPVTT  60
VLPCRDVMFQ HPKTRSCELL AQLPSCMPLD SGSHAQALIS NQPKWFNFSN NSDSNVLEEI  120
VGTRILIPVA EGLIELFVAK QVCEDQNVMD YIVTLCNISL EQSSMMNSSC MDTHFTALNA  180
QALNEYQAKT HLSNENDRKD PIINHFQPPL TTTLETLNLP YDISIDQIRS TNTLQQYHYL  240
SEDKNNKNMD VCVEGSHEVF LSDKVVNPLK SSVDNGLQEM DPLNSMMTNE SMVIQGNEKD  300
SIKQENGRSD SISDCSDQND DEDDARYQRR SGSKGQSKNL VAERKRRKKL NERLYSLRSL  360
VPKISKLDRA SILGDAIEFV KELENQKKEL QDELEEHSDN DNGAKKTGMN GVHKKFQSEI  420
FLQNDQIPLY FNPEHDKGPN GFPVGVNGSV SRAQNQEVDT CADKTQQMEV QVEVAQIDGN  480
QFFVKVFSEH KPSGFVRLME ALDSLGLEVT NANVNSFRGL VSNVFKVEKK DSEMVQADHV  540
RESLLELTRN PSKGLSEMVK ASETNNGNGV ECNYHNQQQH LHNQRITSHH HELHHFPPKQ  600
AA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1342349ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6228412e-98JX622841.1 Gossypium hirsutum clone NBRI_GE69754 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012436386.10.0PREDICTED: transcription factor ABORTED MICROSPORES isoform X2
TrEMBLA0A0D2R8Q70.0A0A0D2R8Q7_GOSRA; Uncharacterized protein
STRINGGorai.008G036900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75892741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-136bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]