PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G036900.1

Common Name

B456_008G036900

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 603aa MW: 68140.2 Da PI: 5.0403

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G036900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.2	2.2e-11	341	384	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er+RR+++N+++ Lr+l+Pk + Kl+ a+iL A+e++k+L+ Gorai.008G036900.1 341 VAERKRRKKLNERLYSLRSLVPKiS------KLDRASILGDAIEFVKELE 384 68*******************66......**************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	3.7E-21	7	153	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	15.77	334	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.59E-11	336	388	No hit	No description
SuperFamily	SSF47459	1.31E-15	338	397	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.3E-14	340	389	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.3E-9	341	384	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-15	341	397	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009555	Biological Process	pollen development
GO:0048657	Biological Process	anther wall tapetum cell differentiation
GO:0005634	Cellular Component	nucleus
GO:0000978	Molecular Function	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 603 aa Download sequence Send to blast
MNIFQNLMER LRQVVGPKGW DYCVLWKLSD DQRFLEWVDC CCGGAESIES SGELQFPVTT 60 VLPCRDVMFQ HPKTRSCELL AQLPSCMPLD SGSHAQALIS NQPKWFNFSN NSDSNVLEEI 120 VGTRILIPVA EGLIELFVAK QVCEDQNVMD YIVTLCNISL EQSSMMNSSC MDTHFTALNA 180 QALNEYQAKT HLSNENDRKD PIINHFQPPL TTTLETLNLP YDISIDQIRS TNTLQQYHYL 240 SEDKNNKNMD VCVEGSHEVF LSDKVVNPLK SSVDNGLQEM DPLNSMMTNE SMVIQGNEKD 300 SIKQENGRSD SISDCSDQND DEDDARYQRR SGSKGQSKNL VAERKRRKKL NERLYSLRSL 360 VPKISKLDRA SILGDAIEFV KELENQKKEL QDELEEHSDN DNGAKKTGMN GVHKKFQSEI 420 FLQNDQIPLY FNPEHDKGPN GFPVGVNGSV SRAQNQEVDT CADKTQQMEV QVEVAQIDGN 480 QFFVKVFSEH KPSGFVRLME ALDSLGLEVT NANVNSFRGL VSNVFKVEKK DSEMVQADHV 540 RESLLELTRN PSKGLSEMVK ASETNNGNGV ECNYHNQQQH LHNQRITSHH HELHHFPPKQ 600 AA*

Sequence ? help Back to Top

Protein Sequence Length: 603 aa Download sequence Send to blast

MNIFQNLMER LRQVVGPKGW DYCVLWKLSD DQRFLEWVDC CCGGAESIES SGELQFPVTT  60
VLPCRDVMFQ HPKTRSCELL AQLPSCMPLD SGSHAQALIS NQPKWFNFSN NSDSNVLEEI  120
VGTRILIPVA EGLIELFVAK QVCEDQNVMD YIVTLCNISL EQSSMMNSSC MDTHFTALNA  180
QALNEYQAKT HLSNENDRKD PIINHFQPPL TTTLETLNLP YDISIDQIRS TNTLQQYHYL  240
SEDKNNKNMD VCVEGSHEVF LSDKVVNPLK SSVDNGLQEM DPLNSMMTNE SMVIQGNEKD  300
SIKQENGRSD SISDCSDQND DEDDARYQRR SGSKGQSKNL VAERKRRKKL NERLYSLRSL  360
VPKISKLDRA SILGDAIEFV KELENQKKEL QDELEEHSDN DNGAKKTGMN GVHKKFQSEI  420
FLQNDQIPLY FNPEHDKGPN GFPVGVNGSV SRAQNQEVDT CADKTQQMEV QVEVAQIDGN  480
QFFVKVFSEH KPSGFVRLME ALDSLGLEVT NANVNSFRGL VSNVFKVEKK DSEMVQADHV  540
RESLLELTRN PSKGLSEMVK ASETNNGNGV ECNYHNQQQH LHNQRITSHH HELHHFPPKQ  600
AA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	342	349	ERKRRKKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX622841	2e-98	JX622841.1 Gossypium hirsutum clone NBRI_GE69754 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012436386.1	0.0	PREDICTED: transcription factor ABORTED MICROSPORES isoform X2
TrEMBL	A0A0D2R8Q7	0.0	A0A0D2R8Q7_GOSRA; Uncharacterized protein
STRING	Gorai.008G036900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7589	27	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-136	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.008G036900.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]