PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TALE

Protein Properties

Length: 680aa MW: 74678.9 Da PI: 5.5247

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G031100.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.9	3.9e-09	420	457	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gLt +qV +WF N R + Gorai.008G031100.3 420 FEHflHPYPKDSDKIMLARQTGLTRSQVANWFINARVR 457 664459******************************88 PP
2	BELL	125.9	1.6e-40	282	353	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+qelq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iS hFrcL+dai +qi Gorai.008G031100.3 282 EKQELQSKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISCHFRCLRDAINGQI 353 689*******************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	3.0E-62	205	351	IPR006563	POX domain
Pfam	PF07526	2.3E-51	211	349	IPR006563	POX domain
PROSITE profile	PS50071	12.082	398	461	IPR001356	Homeobox domain
CDD	cd00086	8.49E-13	401	462	No hit	No description
SMART	SM00389	1.7E-9	401	465	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.56E-17	402	468	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.4E-28	404	467	IPR009057	Homeodomain-like
Pfam	PF05920	1.3E-17	418	457	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence Send to blast
MATYDTGSDN QKDTAPMIYF RESMPGSFPE APVLPGNAIM YMNSGSYLDA FAGNSQQQNN 60 CVEILAVEAS DSTPQQQEIL SNLGGSRVGD FGTWRDGRNE ILVMHPMDGT ASILHSGQNL 120 QGQGLSLSLG TQIPSGIQMT SIPYRNPNST FASFLSPNPT LTGEGGSRTS SCRDEQSRNA 180 EYVPPGFSGG NQDSNKGDLS AYGMSSTSRT IPNSKYLKAV QQLLDEVVNV RMALKQCNGE 240 KNQSSEDNRM KSSKEDDGGS KKMPSNRQES SNNTPNQLSQ AEKQELQSKL TKLLSMLDEV 300 DRRYKQYYHQ MQIVVSSFDV IAGCGAAKPY TALALQTISC HFRCLRDAIN GQIRATRKSL 360 GEQDTSENGK GVGITRLRYV DQQLRQQRAL QQLGMMQQHA WRPQRGLPES SVSILRAWLF 420 EHFLHPYPKD SDKIMLARQT GLTRSQVANW FINARVRLWK PMVEEMYKEE FADAEMDSNS 480 SSENAVKATK GDTRTSEDRG EDVQQSESSL AIERCDTRQL VDSKPNPVPS LVDMAGPVTG 540 AGFQYFTRGE TETEHMLLQL REEQRPNIDD SNLFPNAISH PDGDSGRIMA VAAYQMSGFG 600 NFGNRSSVSL TLGLQHCEGG NIPISGGGHQ DFVAMRGDDI CNPTASTVGA AETSDFECIN 660 PGNRQHGFSS SHLLHDFVT*

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence Send to blast

MATYDTGSDN QKDTAPMIYF RESMPGSFPE APVLPGNAIM YMNSGSYLDA FAGNSQQQNN  60
CVEILAVEAS DSTPQQQEIL SNLGGSRVGD FGTWRDGRNE ILVMHPMDGT ASILHSGQNL  120
QGQGLSLSLG TQIPSGIQMT SIPYRNPNST FASFLSPNPT LTGEGGSRTS SCRDEQSRNA  180
EYVPPGFSGG NQDSNKGDLS AYGMSSTSRT IPNSKYLKAV QQLLDEVVNV RMALKQCNGE  240
KNQSSEDNRM KSSKEDDGGS KKMPSNRQES SNNTPNQLSQ AEKQELQSKL TKLLSMLDEV  300
DRRYKQYYHQ MQIVVSSFDV IAGCGAAKPY TALALQTISC HFRCLRDAIN GQIRATRKSL  360
GEQDTSENGK GVGITRLRYV DQQLRQQRAL QQLGMMQQHA WRPQRGLPES SVSILRAWLF  420
EHFLHPYPKD SDKIMLARQT GLTRSQVANW FINARVRLWK PMVEEMYKEE FADAEMDSNS  480
SSENAVKATK GDTRTSEDRG EDVQQSESSL AIERCDTRQL VDSKPNPVPS LVDMAGPVTG  540
AGFQYFTRGE TETEHMLLQL REEQRPNIDD SNLFPNAISH PDGDSGRIMA VAAYQMSGFG  600
NFGNRSSVSL TLGLQHCEGG NIPISGGGHQ DFVAMRGDDI CNPTASTVGA AETSDFECIN  660
PGNRQHGFSS SHLLHDFVT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	3e-16	407	464	1	58	Homeobox protein Meis1
4xrs_B	3e-16	407	464	1	58	Homeobox protein Meis1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012436283.1	0.0	PREDICTED: BEL1-like homeodomain protein 6
TrEMBL	A0A0D2PN45	0.0	A0A0D2PN45_GOSRA; Uncharacterized protein
STRING	Gorai.008G031100.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34610.2	1e-138	BEL1-like homeodomain 6

Link Out ? help Back to Top
Phytozome	Gorai.008G031100.3
Entrez Gene	105762880

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]