PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G378300.3
Common NameB456_007G378300
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 293aa    MW: 32991.9 Da    PI: 9.1931
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G378300.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.3e-09752346
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                        +W++eE + + +a +++ ++   +W ++a++++ g+t ++++  ++ 
  Gorai.007G378300.3  7 KWSAEENKCFENALALYDTDtpdRWFKVAAMVP-GKTVEDVIKQYRE 52
                        8********************************.*******999986 PP
2Myb_DNA-binding45.12.3e-14115159347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE+ +++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  Gorai.007G378300.3 115 PWTEEEHRQFLMGLKKYGKGDWRNISRNFVMTRTPTQVASHAQKY 159
                         8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.222358IPR017884SANT domain
SMARTSM007177.2E-11456IPR001005SANT/Myb domain
SuperFamilySSF466892.51E-11660IPR009057Homeodomain-like
PfamPF002494.6E-8752IPR001005SANT/Myb domain
CDDcd001673.81E-8753No hitNo description
PROSITE profilePS5129421.447108164IPR017930Myb domain
SuperFamilySSF466896.13E-17110163IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-17111163IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.609.7E-13112159IPR009057Homeodomain-like
SMARTSM007173.8E-13112162IPR001005SANT/Myb domain
PfamPF002491.8E-12115159IPR001005SANT/Myb domain
CDDcd001673.21E-11115160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MKSKGTKWSA EENKCFENAL ALYDTDTPDR WFKVAAMVPG KTVEDVIKQY RELEEDVSDI  60
EAGLIPIPGY TTDSFRLEWV NDSQGFDGIR NYYTPGGKRG SGSRPSDHER KKGVPWTEEE  120
HRQFLMGLKK YGKGDWRNIS RNFVMTRTPT QVASHAQKYF IRQLTGGKDK KRTSIHDITT  180
VNIPDTPSSS PDHSKPLSPN NSSAVIQSQQ QSKVPSVTTK ELFDFEWKQH NEGVAAMVFN  240
QTSTGNALLS PLCGISSYGT KLEEKQLPRG TLPRSQFGSY NTLFQMQSMQ HQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-19272575RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016679905.10.0PREDICTED: transcription factor DIVARICATA-like isoform X2
SwissprotQ8S9H71e-110DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0D2R5P70.0A0A0D2R5P7_GOSRA; Uncharacterized protein
STRINGGorai.007G378300.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-107MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]