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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G371300.2 | ||||||||
Common Name | B456_007G371300, LOC105761782 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 303aa MW: 32694.4 Da PI: 4.4297 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.7 | 4.2e-05 | 275 | 298 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg+sF + L++H + H Gorai.007G371300.2 275 FPCKSCGRSFGSENALQSHSKAkH 298 89*****************88777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.0052 | 275 | 298 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.011 | 275 | 298 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 277 | 298 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MEFWGAEVKS GQSFEVELED DGSRILHISQ AALGEVTSDN KKEKGNGTAC IYLKFNNEKF 60 VIGTLSHDKF PQMPLDLALH SKFELSHTWK NGSVYFTGYY VDTPQGSESE EELPEPIVNP 120 VKPHATISDP TTSKQVKIVE PKKAEDSSDD EDEDDTSTED EMSSEDQEPG MLVNGENESD 180 NDTDSDEDDS EEESSDEDPE TPETEKAGPS KKRSAESATK TPAPEKKAKL VTPQKTDGKK 240 VGGHTATPHP SKEARKASAT TGQVNQSAKP GGSSFPCKSC GRSFGSENAL QSHSKAKHGI 300 AV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012435158.1 | 0.0 | PREDICTED: histone deacetylase HDT1-like isoform X2 | ||||
TrEMBL | A0A0D2SWQ0 | 0.0 | A0A0D2SWQ0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G371300.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03740.1 | 8e-27 | histone deacetylase 2C |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G371300.2 |
Entrez Gene | 105761782 |
Publications ? help Back to Top | |||
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