PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G371300.1

Common Name

B456_007G371300, LOC105761782

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 305aa MW: 32838.5 Da PI: 4.4297

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G371300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.2e-05	277	300	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg+sF + L++H + H Gorai.007G371300.1 277 FPCKSCGRSFGSENALQSHSKAkH 300 89*****************88777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.0052	277	300	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.011	277	300	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	279	300	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MEFWGAEVKS GQSFEVELED DGSRILHISQ AALGEVTSDN KKEKGNGTAC IYLKFNNEKF 60 VIGTLSHDKF PQMPLDLALH SKFELSHTWK NGSVYFTGYY VDTPQGSGSE SEEELPEPIV 120 NPVKPHATIS DPTTSKQVKI VEPKKAEDSS DDEDEDDTST EDEMSSEDQE PGMLVNGENE 180 SDNDTDSDED DSEEESSDED PETPETEKAG PSKKRSAESA TKTPAPEKKA KLVTPQKTDG 240 KKVGGHTATP HPSKEARKAS ATTGQVNQSA KPGGSSFPCK SCGRSFGSEN ALQSHSKAKH 300 GIAV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012435157.1	0.0	PREDICTED: histone deacetylase HDT1-like isoform X1
TrEMBL	A0A0D2PKC3	0.0	A0A0D2PKC3_GOSRA; Uncharacterized protein
STRING	Gorai.007G371300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2027	26	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03740.1	1e-26	histone deacetylase 2C

Link Out ? help Back to Top
Phytozome	Gorai.007G371300.1
Entrez Gene	105761782

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]