PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G362200.1
Common NameB456_007G362200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 334aa    MW: 37457.6 Da    PI: 8.779
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G362200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.32e-1962109148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+WT+eEd +lvd+++++G   Wk++++  g++R++k+c++rw +yl
  Gorai.007G362200.1  62 KGPWTPEEDRILVDYIQKHGHSKWKSVPALAGLNRCGKSCRLRWTNYL 109
                         79********************************************97 PP
2Myb_DNA-binding52.61e-16115158146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+++ eE++l++d+++++G++ W++Iar+++ gRt++++k+ w++
  Gorai.007G362200.1 115 RGNFSSEEEQLIIDLHALMGNK-WSAIARHLP-GRTDNEVKNLWNS 158
                         89********************.*********.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-2556112IPR009057Homeodomain-like
PROSITE profilePS5129426.10957113IPR017930Myb domain
SuperFamilySSF466897.81E-3259156IPR009057Homeodomain-like
SMARTSM007179.9E-1661111IPR001005SANT/Myb domain
PfamPF002491.8E-1762109IPR001005SANT/Myb domain
CDDcd001671.37E-1264109No hitNo description
Gene3DG3DSA:1.10.10.601.6E-26113165IPR009057Homeodomain-like
SMARTSM007171.3E-14114162IPR001005SANT/Myb domain
PROSITE profilePS5129420.881114164IPR017930Myb domain
PfamPF002491.2E-14115158IPR001005SANT/Myb domain
CDDcd001674.23E-11117160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MPINIITILT INTKRTYTHI HYIKKPPTFS QFQHLNYIPS LFSSPIIQFK GMKGNDKNGL  60
KKGPWTPEED RILVDYIQKH GHSKWKSVPA LAGLNRCGKS CRLRWTNYLR PNIKRGNFSS  120
EEEQLIIDLH ALMGNKWSAI ARHLPGRTDN EVKNLWNSRL KRKLIQMGID PITHEPLTDP  180
RLHQLLAAAS FSNLINNPLD IVNALMLQSD AVATLAKSLH LSHNMLQALA STPTTMASQD  240
PTKACSTSNE YQFGSSSSSL PVNVPNLDTT PQPIPPMAPR PTIVDDHHET NNITNPSSTT  300
LQEWDDFMDG GEASEPYWRD IIDQASSQSW PIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-29601645108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012434998.10.0PREDICTED: transcription repressor MYB6-like isoform X1
TrEMBLA0A0D2PJS50.0A0A0D2PJS5_GOSRA; Uncharacterized protein
STRINGGorai.007G362200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3609622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.24e-79myb domain protein 9
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]