PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G361700.4 | ||||||||
Common Name | B456_007G361700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 288aa MW: 31442.4 Da PI: 6.8925 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.8 | 9.1e-09 | 199 | 246 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L + +++++sLq Gorai.007G361700.4 199 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 246 8*************************9....888999999999999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.75E-15 | 193 | 264 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.64E-8 | 193 | 250 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.1E-15 | 195 | 263 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.519 | 195 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.0E-6 | 199 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.9E-8 | 201 | 251 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MESNAGTLET RSNKTALERE EVAALESLQF TDEIHCLMSA PATDNASSFT ALLELPAPQA 60 VQLIHSPDSA KLIAAPAPNV EDFKGGFHFP SNGGLIERAA RFSVFAGEGN NKSDSPEATS 120 NISSANLQKA VKSEPAETDS SQPLISDPTV ENRGIKRKDR EKVKGQTKKS KTTVKESSDD 180 TEKLPYVHVR ARRGQATDSH SLAERARREK INARMKLLQE LVPGCNKISG TALVLDEIIN 240 HVQSLQRQVE FLSMRLAAVN PRVDFNFDSV FTAEVSIRHL FSYLLSL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.1917 | 0.0 | flower|seedling| flowering |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012434992.1 | 0.0 | PREDICTED: transcription factor bHLH48-like | ||||
Swissprot | Q3EAI1 | 2e-79 | BH060_ARATH; Transcription factor bHLH60 | ||||
Swissprot | Q8VZ02 | 1e-79 | BH048_ARATH; Transcription factor bHLH48 | ||||
TrEMBL | A0A0D2PJV7 | 0.0 | A0A0D2PJV7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G361700.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57800.2 | 6e-89 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G361700.4 |
Publications ? help Back to Top | |||
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