PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G361700.2 | ||||||||
Common Name | B456_007G361700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 247aa MW: 27069.7 Da PI: 5.6504 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.2 | 7.1e-09 | 136 | 183 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L + +++++sLq Gorai.007G361700.2 136 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 183 8*************************9....888999999999999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 6.44E-9 | 130 | 187 | No hit | No description |
SuperFamily | SSF47459 | 2.09E-15 | 130 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.1E-15 | 132 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.519 | 132 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-6 | 136 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.9E-8 | 138 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MESNAGTLET RSNKTALERE EVAALESLQF TDEIHCLMSA PATDNASSFT ALLELPAPQA 60 VQLIHSPDSA KLIAAPAPNV EDFKGGFHFP SNGGLIERAA RFSVFAGEGN NKKSSDDTEK 120 LPYVHVRARR GQATDSHSLA ERARREKINA RMKLLQELVP GCNKISGTAL VLDEIINHVQ 180 SLQRQVEFLS MRLAAVNPRV DFNFDSVFTA ESGFFMDSNF SGMVMPMMWP EIQLSATCLG 240 ERRSLQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gra.1917 | 0.0 | flower|seedling| flowering |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016669478.1 | 1e-109 | PREDICTED: transcription factor bHLH48-like isoform X4 | ||||
Swissprot | Q8VZ02 | 2e-73 | BH048_ARATH; Transcription factor bHLH48 | ||||
TrEMBL | A0A0D2TSB3 | 0.0 | A0A0D2TSB3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G361700.1 | 1e-108 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42300.1 | 1e-75 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G361700.2 |
Publications ? help Back to Top | |||
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