PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G353000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 257aa MW: 28805.9 Da PI: 6.3055 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.4 | 9.6e-12 | 69 | 121 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +hn+ E RR+++N+ ++ Lr++lP++ ++ k+ls +++ + +YI +Lq Gorai.007G353000.1 69 KKLNHNASECVRRRKMNDLYSSLRSMLPPS--EQTKRLSIPATVSRMLKYIPELQ 121 6789*************************7..36666***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.79E-10 | 67 | 125 | No hit | No description |
SuperFamily | SSF47459 | 1.83E-12 | 67 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.16 | 68 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.6E-9 | 69 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-8 | 69 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.1E-5 | 74 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MCALFPVCEW PLDAPIGHQH IISGAFAGFE SFDDFHHFTF PDDLPRIQLD RPMLSAGDTG 60 DENPTTVEKK LNHNASECVR RRKMNDLYSS LRSMLPPSEQ TKRLSIPATV SRMLKYIPEL 120 QLQVEILLQK KQQILSTICK QDDHDLSNQH HQNKTKLSDG FKVSPFTVSG TKVTDTEATI 180 QISTFGPTSQ GIPPLSPILR GLEEDGLFLT DASCFESFGG RVFYNLNFQV ETTYNLEAML 240 LVLNEKLLSL YKKGKA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX582021 | 1e-72 | JX582021.1 Gossypium hirsutum clone NBRI_GE14786 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012434882.1 | 0.0 | PREDICTED: transcription factor ORG2-like isoform X1 | ||||
TrEMBL | A0A2P5R7S4 | 0.0 | A0A2P5R7S4_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.007G353000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM482 | 28 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 3e-45 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G353000.1 |