PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G352300.1
Common NameB456_007G352300, LOC105761572
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 234aa    MW: 26249.9 Da    PI: 7.9961
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G352300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.2e-1264110354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h+e+E+rRR+riNs +++Lr llP +      K +Ka+ L k+v+ +k+L
  Gorai.007G352300.1  64 KNHKEAEKRRRERINSHLNRLRALLPCN-----SKTDKASLLAKVVQRVKEL 110
                         58*************************8.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.45961110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.01E-1164113No hitNo description
PfamPF000105.8E-1064110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-1365127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-1365118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-1067116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.8E-5148211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MQPENFELYR FLAENGVGSY GGFPSGSEFP AMQSFSSSST YYPLEMSGVT TETTPHDKAL  60
AALKNHKEAE KRRRERINSH LNRLRALLPC NSKTDKASLL AKVVQRVKEL KEQALETTEL  120
DNLPSETDEI TVLSCDYSGD GRLIFKASLC CEDRSDLLPE LIDILKSLHL KTLKAEMATL  180
GGRIRNVFIV AADKDHSIES VHFLQNALKS LLERSNPSDR SKRRRVLDHK IIM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221225KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5841341e-126JX584134.1 Gossypium hirsutum clone NBRI_GE17351 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012434877.11e-172PREDICTED: transcription factor bHLH106
RefseqXP_016711917.11e-172PREDICTED: transcription factor bHLH106
RefseqXP_017629747.11e-172PREDICTED: transcription factor bHLH106
SwissprotO806742e-89BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A0D2R4I31e-171A0A0D2R4I3_GOSRA; Uncharacterized protein
TrEMBLA0A1U8LBD81e-171A0A1U8LBD8_GOSHI; transcription factor bHLH106
TrEMBLA0A2P5Y4X91e-171A0A2P5Y4X9_GOSBA; Uncharacterized protein
STRINGGorai.007G352300.11e-171(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36422762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.18e-92bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]