PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G346400.1
Common NameB456_007G346400, LOC105761493
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 372aa    MW: 40867.5 Da    PI: 9.8254
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G346400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.28.1e-18118163147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg W + Ed +l+++v+q+G+ +W++Ia+++  gR++k+c++rw++ 
  Gorai.007G346400.1 118 RGHWRPAEDARLKELVTQYGPQNWNLIAEHLE-GRSGKSCRLRWFNQ 163
                         899*****************************.***********996 PP
2Myb_DNA-binding55.61.2e-17170213146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         r ++++eE+e+l+ a+k +G++ W++Iar ++ gRt++ +k++w+ 
  Gorai.007G346400.1 170 RRAFSEEEEERLLTAHKVYGNK-WALIARLFP-GRTDNAVKNHWHV 213
                         678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.147113164IPR017930Myb domain
SMARTSM007174.1E-14117166IPR001005SANT/Myb domain
PfamPF002495.1E-16118163IPR001005SANT/Myb domain
SuperFamilySSF466892.47E-28118211IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-26119171IPR009057Homeodomain-like
CDDcd001673.40E-13121162No hitNo description
PROSITE profilePS5129426.698165219IPR017930Myb domain
SMARTSM007172.7E-15169217IPR001005SANT/Myb domain
PfamPF002499.5E-15170212IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-20172218IPR009057Homeodomain-like
CDDcd001671.99E-12172212No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MSPLNLSNDF NCYNGGEVQE RNFLSLPSIF PHQIGRDTKN SEMGFQIPAS LMEQSNKSLS  60
FDPFQTRGTD GVVAAGDGKS GFLGVEKKGL SLNLSVENES NKTPGGSVKN GHTKLCSRGH  120
WRPAEDARLK ELVTQYGPQN WNLIAEHLEG RSGKSCRLRW FNQLDPRINR RAFSEEEEER  180
LLTAHKVYGN KWALIARLFP GRTDNAVKNH WHVIMARKHR EQSSIYRRRR PSSSASFPKG  240
LDLTVRNNAS SDQSTISCSN STSTDLALTP SSTKKVVPPH QIFTTFSGVH QKGEKVKVGS  300
SGNGDFGKYG SQQRPMGVVM GVDQYANSSD SNSEISATES VGTNRTNNSQ TAIGDDKINM  360
HFIDFLGVGA S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-341182187107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225230YRRRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012434768.10.0PREDICTED: myb-like protein Q
TrEMBLA0A0D2R4610.0A0A0D2R461_GOSRA; Uncharacterized protein
STRINGGorai.007G346400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17800.13e-69myb domain protein 56
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]