PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G346200.1
Common NameB456_007G346200, LOC105761491
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 253aa    MW: 27601.1 Da    PI: 7.6246
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G346200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.61.2e-39421431101
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC+++C++ap+f ++q ++kfa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l
  Gorai.007G346200.1  42 PCGACKFLRRKCVSGCIFAPHFGSDQgAAKFAAVHKVFGASNVSKLLLHIPMNRRHDAVVTISYEAQARLSDPVYGCVSTILSLQQQVASL 132
                         7***********************9989*************************************************************** PP

              DUF260  91 kaelallkeel 101
                         +ael++++++l
  Gorai.007G346200.1 133 QAELVMVQNQL 143
                         *******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.12141143IPR004883Lateral organ boundaries, LOB
PfamPF031957.9E-3942140IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MADPQCHGLS ETCRKGAGKR TTMPVEAKPV VASEVAPIPT APCGACKFLR RKCVSGCIFA  60
PHFGSDQGAA KFAAVHKVFG ASNVSKLLLH IPMNRRHDAV VTISYEAQAR LSDPVYGCVS  120
TILSLQQQVA SLQAELVMVQ NQLINSRFAM ANALQSSQQQ QHHHQHHHQQ QQQQHLALLQ  180
PAYSNNSSAS NNLINISNFA SNFDLVAETT TAPNSSQSMD HLQLSRPCHD DEDDEQDSRI  240
PPVFVNPIIH RT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-37321491115LOB family transfactor Ramosa2.1
5ly0_B6e-37321491115LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012434765.10.0PREDICTED: LOB domain-containing protein 20
SwissprotQ9SRV39e-75LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A0D2TRJ60.0A0A0D2TRJ6_GOSRA; Uncharacterized protein
STRINGGorai.007G346200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-63LOB domain-containing protein 20
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]