PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 485aa MW: 54138.3 Da PI: 7.5276

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G312400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.5	3.5e-14	43	90	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed lv++v+ +G g+W+++ + g+ R++k+c++rw ++l Gorai.007G312400.1 43 KGPWTAIEDAVLVEYVRSHGEGSWNAVQKNTGLARCGKSCRLRWVNHL 90 79*******************************************996 PP
2	Myb_DNA-binding	49.8	7.8e-16	96	139	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+++++++++++G++ W++ a ++ gRt++++k++w++ Gorai.007G312400.1 96 KGSFSPEEEKIIIELHAKMGNK-WARMATQLP-GRTDNEIKNYWNT 139 799*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.832	38	90	IPR017930	Myb domain
SuperFamily	SSF46689	1.41E-28	40	137	IPR009057	Homeodomain-like
SMART	SM00717	7.1E-12	42	92	IPR001005	SANT/Myb domain
Pfam	PF00249	4.4E-13	43	90	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.7E-22	44	97	IPR009057	Homeodomain-like
CDD	cd00167	1.03E-9	45	90	No hit	No description
PROSITE profile	PS51294	25.137	91	145	IPR017930	Myb domain
SMART	SM00717	4.3E-16	95	143	IPR001005	SANT/Myb domain
Pfam	PF00249	5.1E-15	96	139	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-25	98	144	IPR009057	Homeodomain-like
CDD	cd00167	1.43E-11	98	139	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MMMMMGGNNQ FTAQNEGGEF LGSNGMNSGG VGGGREGEIP LKKGPWTAIE DAVLVEYVRS 60 HGEGSWNAVQ KNTGLARCGK SCRLRWVNHL RPNLKKGSFS PEEEKIIIEL HAKMGNKWAR 120 MATQLPGRTD NEIKNYWNTR VKRRQRQGLP LYPPHVQPFY SQHQHRQRHS HPPPTTAPNS 180 CFSFQTPIVS PHTSNPMPLH PLHIPHRPPP QNFLYNPHSA LTTPPPPLQS PNSASTPPPL 240 PSPSASTPHH ISPLHSPHNP PPFPTLPLIN YPNTTADDDF FHSNKRFKHD GLQSNNYNNN 300 HLDATSSRFT LPFSPMQHYS NRMTLDLPSS SRTTFNHHPH QDSGDFYPLK MDLRSNQIND 360 DGLLENMLQE AQALAANGNG GNNEIPKEMM YAAQNEEDYS RLINIDGPSS FGTAIPEWCN 420 DNGESSERQP SAIIDNENHL ALDMHHIASL HPADISPNHA ARSSSVRSWD NFPALEQSRF 480 LVKI*

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MMMMMGGNNQ FTAQNEGGEF LGSNGMNSGG VGGGREGEIP LKKGPWTAIE DAVLVEYVRS  60
HGEGSWNAVQ KNTGLARCGK SCRLRWVNHL RPNLKKGSFS PEEEKIIIEL HAKMGNKWAR  120
MATQLPGRTD NEIKNYWNTR VKRRQRQGLP LYPPHVQPFY SQHQHRQRHS HPPPTTAPNS  180
CFSFQTPIVS PHTSNPMPLH PLHIPHRPPP QNFLYNPHSA LTTPPPPLQS PNSASTPPPL  240
PSPSASTPHH ISPLHSPHNP PPFPTLPLIN YPNTTADDDF FHSNKRFKHD GLQSNNYNNN  300
HLDATSSRFT LPFSPMQHYS NRMTLDLPSS SRTTFNHHPH QDSGDFYPLK MDLRSNQIND  360
DGLLENMLQE AQALAANGNG GNNEIPKEMM YAAQNEEDYS RLINIDGPSS FGTAIPEWCN  420
DNGESSERQP SAIIDNENHL ALDMHHIASL HPADISPNHA ARSSSVRSWD NFPALEQSRF  480
LVKI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-30	41	144	5	107	B-MYB
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX615992	7e-76	JX615992.1 Gossypium hirsutum clone NBRI_GE60319 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012488302.1	0.0	PREDICTED: myb-like protein A
TrEMBL	A0A0D2R2P1	0.0	A0A0D2R2P1_GOSRA; Uncharacterized protein
STRING	Gorai.007G312400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5100	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.1	4e-69	myb domain protein 101

Link Out ? help Back to Top
Phytozome	Gorai.007G312400.1
Entrez Gene	105801631

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]