PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G309400.1

Common Name

B456_007G309400

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 707aa MW: 76381.1 Da PI: 6.1394

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G309400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.6	3.5e-16	442	488	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A++Y+k Lq Gorai.007G309400.1 442 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIDYLKTLQ 488 6***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.79E-20	436	497	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.5E-20	436	497	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.451	438	487	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.92E-17	441	492	No hit	No description
Pfam	PF00010	1.2E-13	442	488	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-17	444	493	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009704	Biological Process	de-etiolation
GO:0009740	Biological Process	gibberellic acid mediated signaling pathway
GO:0010017	Biological Process	red or far-red light signaling pathway
GO:0031539	Biological Process	positive regulation of anthocyanin metabolic process
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 707 aa Download sequence Send to blast
MPLSELYRMA RGKLDSSQDK NPSSSTDPSI VPEDDFVELV WENGQISMQG QSSVARKVPA 60 CNSLQSHSFK IRDKYIGNGG NSSKMGKFGV VDAVSSEVLM SAPSHDDDVV PWLKYSENEC 120 SDMLPGLSGL TTNKIPTDGS LASFNQRRQS ISDSFTVSLN AAADFKQGKL AKVPKPADDE 180 ARLRSGTSEW PQLCQVSSSY LRSRNLESIG NNPSHAFFRD TMGVQLSDET LRGVKMQKQD 240 PVAPCNNTVL MNFSHFSRPA ALVKASLQNI GAMARIESKE TGFAASTRGP VDSKAIDSNI 300 KLQKENFLHC HSTIVPMKTD IKQSEAKSPD EPVAAEPNDA ICEEYVLKSD KISSQVIDEN 360 ASKCLPESGK AVESVLAASV FCENSVERAS DDPVVHNLKK KNHDNEEFEC PSEDAEEESV 420 GVKKAVPTRG GKGFKRSRAA EVHNLSERRR RDRINEKMRA LQELIPNCNK VDKASMLDEA 480 IDYLKTLQLQ VQIMSMRAGL SVPPMMLPTG MQHMHATQMA YFSSMGFGMG LGMGFGMPFP 540 ETNTIASAFP MVQVPPVCGA PFSGSGPHLS GSTAFHEMPG ANLPLYGLHG QGLPMSMPGA 600 PLFPIPGGHL MKSAIGLSAC GLGGPMDNMD SATASSSKDP IQNINSQVAQ NTNINSSMNQ 660 TSTQYQTANE SFQQPAEVQE NGRASEITGS VPFRSTDGDK KLPDRL*

Sequence ? help Back to Top

Protein Sequence Length: 707 aa Download sequence Send to blast

MPLSELYRMA RGKLDSSQDK NPSSSTDPSI VPEDDFVELV WENGQISMQG QSSVARKVPA  60
CNSLQSHSFK IRDKYIGNGG NSSKMGKFGV VDAVSSEVLM SAPSHDDDVV PWLKYSENEC  120
SDMLPGLSGL TTNKIPTDGS LASFNQRRQS ISDSFTVSLN AAADFKQGKL AKVPKPADDE  180
ARLRSGTSEW PQLCQVSSSY LRSRNLESIG NNPSHAFFRD TMGVQLSDET LRGVKMQKQD  240
PVAPCNNTVL MNFSHFSRPA ALVKASLQNI GAMARIESKE TGFAASTRGP VDSKAIDSNI  300
KLQKENFLHC HSTIVPMKTD IKQSEAKSPD EPVAAEPNDA ICEEYVLKSD KISSQVIDEN  360
ASKCLPESGK AVESVLAASV FCENSVERAS DDPVVHNLKK KNHDNEEFEC PSEDAEEESV  420
GVKKAVPTRG GKGFKRSRAA EVHNLSERRR RDRINEKMRA LQELIPNCNK VDKASMLDEA  480
IDYLKTLQLQ VQIMSMRAGL SVPPMMLPTG MQHMHATQMA YFSSMGFGMG LGMGFGMPFP  540
ETNTIASAFP MVQVPPVCGA PFSGSGPHLS GSTAFHEMPG ANLPLYGLHG QGLPMSMPGA  600
PLFPIPGGHL MKSAIGLSAC GLGGPMDNMD SATASSSKDP IQNINSQVAQ NTNINSSMNQ  660
TSTQYQTANE SFQQPAEVQE NGRASEITGS VPFRSTDGDK KLPDRL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	446	451	ERRRRD

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00081	ChIP-seq	Transfer from AT1G09530	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012434328.1	0.0	PREDICTED: transcription factor PIF3
TrEMBL	A0A0D2R2I0	0.0	A0A0D2R2I0_GOSRA; Uncharacterized protein
STRING	Gorai.007G309400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7665	27	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	1e-73	phytochrome interacting factor 3

Link Out ? help Back to Top
Phytozome	Gorai.007G309400.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]