PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G298600.1

Common Name

B456_007G298600, LOC105761035

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 513aa MW: 55156.3 Da PI: 9.3533

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G298600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.5e-05	79	101	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Gorai.007G298600.1 79 FVCEICNKGFQRDQNLQLHRRGH 101 89*******************88 PP
2	zf-C2H2	12.1	0.0006	155	177	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Gorai.007G298600.1 155 WKCDKCSKKYAVQSDWKAHSKTC 177 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.7E-5	78	101	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.22E-6	78	101	No hit	No description
Pfam	PF12171	8.2E-5	79	101	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	79	101	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	79	101	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	81	101	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	120	150	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	5.1E-4	143	176	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.22E-6	150	175	No hit	No description
SMART	SM00355	150	155	175	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence Send to blast
MSNITGDGGG SFSSETHHQE QQQVGNFHGG SNSLLSTNSN GGSTAPPPAK KKRNLPGTPD 60 PNAEVIALSP KTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR TSTEIRKRVY 120 VCPEPSCVHH NPARALGDLT GIKKHFCRKH GEKKWKCDKC SKKYAVQSDW KAHSKTCGTK 180 EYKCDCGTIF SRRDSFITHR AFCDALTEEN NKASRGLINV GSNLQGQVVA ADQLISAIPV 240 NNNPNTSAIN ISEPFSNDTK SSLQSLNLAA GTMFSNGSSS LFGGTKVTTV PNPSSTSCLQ 300 LNGNSSTLFE GNGGHLFSGS ASMSATALLQ KAAQMGATAS TGSLNSPLMG KSYTTTSTMA 360 PPSFVSMQTH DNNNNNNQTQ TLGGADSTGF TSQSDFFNAN GGVDQSSSVN NMGVMFSGIF 420 EQNNAFFKSV ESSTPRTTGL SGFSADTMTV DFLGIGGSRP RNLLEKQHHH HHHHPHQPQQ 480 DLEQFGGIGQ ARLQGLSHFQ QPAVLEKPMW KV*

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence Send to blast

MSNITGDGGG SFSSETHHQE QQQVGNFHGG SNSLLSTNSN GGSTAPPPAK KKRNLPGTPD  60
PNAEVIALSP KTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR TSTEIRKRVY  120
VCPEPSCVHH NPARALGDLT GIKKHFCRKH GEKKWKCDKC SKKYAVQSDW KAHSKTCGTK  180
EYKCDCGTIF SRRDSFITHR AFCDALTEEN NKASRGLINV GSNLQGQVVA ADQLISAIPV  240
NNNPNTSAIN ISEPFSNDTK SSLQSLNLAA GTMFSNGSSS LFGGTKVTTV PNPSSTSCLQ  300
LNGNSSTLFE GNGGHLFSGS ASMSATALLQ KAAQMGATAS TGSLNSPLMG KSYTTTSTMA  360
PPSFVSMQTH DNNNNNNQTQ TLGGADSTGF TSQSDFFNAN GGVDQSSSVN NMGVMFSGIF  420
EQNNAFFKSV ESSTPRTTGL SGFSADTMTV DFLGIGGSRP RNLLEKQHHH HHHHPHQPQQ  480
DLEQFGGIGQ ARLQGLSHFQ QPAVLEKPMW KV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-34	151	214	3	66	Zinc finger protein JACKDAW
5b3h_F	1e-34	151	214	3	66	Zinc finger protein JACKDAW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ527266	1e-138	HQ527266.1 Gossypium herbaceum clone NBRI_B_5962 simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012434141.1	0.0	PREDICTED: protein indeterminate-domain 2-like isoform X1
TrEMBL	A0A0D2SM28	0.0	A0A0D2SM28_GOSRA; Uncharacterized protein
STRING	Gorai.007G298600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19649	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-103	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Gorai.007G298600.1
Entrez Gene	105761035

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]