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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G294800.1 | ||||||||
Common Name | B456_007G294800, LOC105804829 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 315aa MW: 34849 Da PI: 6.6344 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41 | 3.5e-13 | 113 | 164 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++++k+L+ Gorai.007G294800.1 113 QRMTHIAVERNRRRQMNEYLSVLRSLMPES---YVQRGDQASIIGGAINFVKELE 164 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.94E-11 | 111 | 165 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.8E-14 | 111 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-16 | 112 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.459 | 112 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-10 | 113 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.7E-9 | 118 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MALEAVVFQQ DLFGYNSKDL YSLLGGNLSY EDIHFPHHNQ KSDEANNNFV NGGDSYWVSS 60 SSSPTSMAPP PPPDEATNNN VNGSSSSALD TSTSRPKRRR LKTRKNKEEI ENQRMTHIAV 120 ERNRRRQMNE YLSVLRSLMP ESYVQRGDQA SIIGGAINFV KELEHCVQLL SAKKETKERP 180 NGSSSGCSSP FGEFFTFPQY STSSTRGDNN SIPMNESMVE TRSAIADIEV TMVESHANLK 240 IRSKKGPAQL LKLVSGLNSM RLNILHLNVT TVDQTVLYSL SVKVEDDCKL TSVDDIATAV 300 NQLLGRIQEE AVLN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 96 | 100 | KRRRL |
2 | 113 | 124 | RMTHIAVERNRR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012493064.1 | 0.0 | PREDICTED: transcription factor bHLH94-like | ||||
Swissprot | Q9SK91 | 3e-83 | BH094_ARATH; Transcription factor bHLH94 | ||||
TrEMBL | A0A0D2R1H3 | 0.0 | A0A0D2R1H3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G294800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1116 | 27 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22490.1 | 2e-82 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G294800.1 |
Entrez Gene | 105804829 |
Publications ? help Back to Top | |||
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