PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 327aa MW: 36815.3 Da PI: 10.5589

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G278400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102	3.4e-32	259	316	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+vers edp+++++tYegeHnh+ Gorai.007G278400.1 259 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERSLEDPSMLIVTYEGEHNHS 316 9***********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.6E-17	210	255	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	7.8E-34	245	316	IPR003657	WRKY domain
PROSITE profile	PS50811	30.572	252	318	IPR003657	WRKY domain
SuperFamily	SSF118290	3.79E-27	255	316	IPR003657	WRKY domain
SMART	SM00774	4.1E-39	257	317	IPR003657	WRKY domain
Pfam	PF03106	1.7E-27	259	315	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MFLSMEKVEE ANKAAIESSN RVLSLLSLPK DQLQYSNLMM KTSEAVFKFK KVVSLLNNDL 60 THSRVRKSKM FRSISPQKIF LESPNCRTIL SPKPLQVYPS NLFQKPPLEV KPSQNFSFGH 120 HQQQQQQMQQ RLQFQQQQQQ MKYHADMVFG KSNSGINLKF DGSSCTPTMS SAGSFVSSLS 180 LDGSVANLDG NSFHLIGMPH LFGHISQHSR KRCSGKGQDG SMKCGTSGKC HCPKRRKLRI 240 KRSIKVPAIS NKVADIPPDE YSWRKYGQKP IKGSPHPRGY YKCSSVRGCP ARKHVERSLE 300 DPSMLIVTYE GEHNHSRLLS THPAHT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	7e-21	255	316	12	72	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF031114	0.0	KF031114.1 Gossypium hirsutum WRKY transcription factor 100 (WRKY100) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012492803.1	0.0	PREDICTED: probable WRKY transcription factor 74
Swissprot	Q93WU6	1e-114	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	A0A0D2SKZ3	0.0	A0A0D2SKZ3_GOSRA; Uncharacterized protein
STRING	Gorai.007G278400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3567	28	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28650.1	8e-99	WRKY DNA-binding protein 74

Link Out ? help Back to Top
Phytozome	Gorai.007G278400.1
Entrez Gene	105804656

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]