PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G278400.1
Common NameB456_007G278400, LOC105804656
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 327aa    MW: 36815.3 Da    PI: 10.5589
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G278400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1023.4e-32259316359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+vers edp+++++tYegeHnh+
  Gorai.007G278400.1 259 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERSLEDPSMLIVTYEGEHNHS 316
                         9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.6E-17210255IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.807.8E-34245316IPR003657WRKY domain
PROSITE profilePS5081130.572252318IPR003657WRKY domain
SuperFamilySSF1182903.79E-27255316IPR003657WRKY domain
SMARTSM007744.1E-39257317IPR003657WRKY domain
PfamPF031061.7E-27259315IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MFLSMEKVEE ANKAAIESSN RVLSLLSLPK DQLQYSNLMM KTSEAVFKFK KVVSLLNNDL  60
THSRVRKSKM FRSISPQKIF LESPNCRTIL SPKPLQVYPS NLFQKPPLEV KPSQNFSFGH  120
HQQQQQQMQQ RLQFQQQQQQ MKYHADMVFG KSNSGINLKF DGSSCTPTMS SAGSFVSSLS  180
LDGSVANLDG NSFHLIGMPH LFGHISQHSR KRCSGKGQDG SMKCGTSGKC HCPKRRKLRI  240
KRSIKVPAIS NKVADIPPDE YSWRKYGQKP IKGSPHPRGY YKCSSVRGCP ARKHVERSLE  300
DPSMLIVTYE GEHNHSRLLS THPAHT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-212553161272WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0311140.0KF031114.1 Gossypium hirsutum WRKY transcription factor 100 (WRKY100) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492803.10.0PREDICTED: probable WRKY transcription factor 74
SwissprotQ93WU61e-114WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLA0A0D2SKZ30.0A0A0D2SKZ3_GOSRA; Uncharacterized protein
STRINGGorai.007G278400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35672861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.18e-99WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]