PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G267900.2
Common NameB456_007G267900, LOC105804539
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 360aa    MW: 40355.4 Da    PI: 8.1852
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G267900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.23.2e-53101441128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeel+ +yLkkk++++++++ ++i++vdiyk++PwdLp k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk 
  Gorai.007G267900.2  10 LPPGFRFHPTDEELILHYLKKKITSSPFPV-SIIADVDIYKFDPWDLPDKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKV 99 
                         79****************************.89***************888889************************************* PP

                 NAM  92 vlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++++         +e++g+kk Lvfykgr pkg kt+W+mheyrl
  Gorai.007G267900.2 100 IVTSsmadrrgeVQENIGVKKALVFYKGRPPKGMKTNWIMHEYRL 144
                         **98787776554555***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.68E-654177IPR003441NAC domain
PROSITE profilePS5100561.54710177IPR003441NAC domain
PfamPF023655.3E-2811144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MNMKHPQSSL PPGFRFHPTD EELILHYLKK KITSSPFPVS IIADVDIYKF DPWDLPDKAA  60
FGEKEWYFFS PRDRKYPNGA RPNRAAASGY WKATGTDKVI VTSSMADRRG EVQENIGVKK  120
ALVFYKGRPP KGMKTNWIMH EYRLADNPNS NFNNRPLKSK DSSMRLDDWV LCRIYKKSNA  180
LSSTTAIGAA TSDQDLEEEE AEQFIKDALL PAAIKSPPTT NALLPQKSCS FSNLLDAMDY  240
SMLSSFLADN QCNGSGYDPT SFTCEQPLVN NYTIGNNSSS SSSMMVQKLP QLSPSVPNME  300
NKLKRQYSSI DEDHPSKKLN SSCSYSNSSS QSDMTHYTFL NQSLFNQSLL LSPHIQFQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-73718014168NO APICAL MERISTEM PROTEIN
1ut4_B2e-73718014168NO APICAL MERISTEM PROTEIN
1ut7_A2e-73718014168NO APICAL MERISTEM PROTEIN
1ut7_B2e-73718014168NO APICAL MERISTEM PROTEIN
4dul_A2e-73718014168NAC domain-containing protein 19
4dul_B2e-73718014168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00333DAPTransfer from AT3G04070Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU7063430.0EU706343.1 Gossypium hirsutum NAC domain protein NAC5 (NAC5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492658.10.0PREDICTED: NAC transcription factor 29-like
SwissprotQ84TD61e-119NAC47_ARATH; NAC transcription factor 47
TrEMBLA0A0D2QZW50.0A0A0D2QZW5_GOSRA; Uncharacterized protein
STRINGGorai.007G267900.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.11e-111NAC domain containing protein 47
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]