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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G242000.1 | ||||||||
Common Name | B456_007G242000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 307aa MW: 34700.4 Da PI: 6.2541 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.6 | 3.3e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELS+LCd+e+a+i+fs++g++ +s Gorai.007G242000.1 9 KRIENDTNRQVTFSKRRNGLIKKAYELSILCDIEIALIMFSPSGRVSHFS 58 79********************************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.969 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.8E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.76E-37 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 4.32E-30 | 2 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.4E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MGRVKLQIKR IENDTNRQVT FSKRRNGLIK KAYELSILCD IEIALIMFSP SGRVSHFSGK 60 KRIEDVLSRY INLPDQDRGC LVRNKEILLS TLKKLQAEHD FVLQLARVYE PEPLTLTSMP 120 EFESCEKNLE QVLTRITQRK MYLDAQEGMP NSFGNDVVGW LPDNGQSQNP TQYCAGSESP 180 CIAVRYTNYT IQFPYKYIIK GNQSSMNTVY DPMGHGTNMS EMGGCHVTTT SSNDGLPSWH 240 HNYSSTELLS AFMSSPTSFP LIKDIGDPSI STKQEQVESG TNFPQMPCRD EDLLKILDEM 300 TKMVNE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 2e-18 | 1 | 94 | 1 | 90 | MEF2 CHIMERA |
6bz1_B | 2e-18 | 1 | 94 | 1 | 90 | MEF2 CHIMERA |
6bz1_C | 2e-18 | 1 | 94 | 1 | 90 | MEF2 CHIMERA |
6bz1_D | 2e-18 | 1 | 94 | 1 | 90 | MEF2 CHIMERA |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX596306 | 2e-41 | JX596306.1 Gossypium hirsutum clone NBRI_GE32858 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012488266.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL8 | ||||
Swissprot | Q1PFC2 | 2e-60 | AGL66_ARATH; Agamous-like MADS-box protein AGL66 | ||||
TrEMBL | A0A0D2QYF9 | 0.0 | A0A0D2QYF9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G242000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2179 | 23 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77980.1 | 8e-63 | AGAMOUS-like 66 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G242000.1 |
Publications ? help Back to Top | |||
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