PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G242000.1
Common NameB456_007G242000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 307aa    MW: 34700.4 Da    PI: 6.2541
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G242000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.63.3e-28958150
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        krien++nrqvtfskRrng++KKA+ELS+LCd+e+a+i+fs++g++  +s
  Gorai.007G242000.1  9 KRIENDTNRQVTFSKRRNGLIKKAYELSILCDIEIALIMFSPSGRVSHFS 58
                        79********************************************9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.969161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-38160IPR002100Transcription factor, MADS-box
CDDcd002651.76E-37278No hitNo description
SuperFamilySSF554554.32E-30280IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-263859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGRVKLQIKR IENDTNRQVT FSKRRNGLIK KAYELSILCD IEIALIMFSP SGRVSHFSGK  60
KRIEDVLSRY INLPDQDRGC LVRNKEILLS TLKKLQAEHD FVLQLARVYE PEPLTLTSMP  120
EFESCEKNLE QVLTRITQRK MYLDAQEGMP NSFGNDVVGW LPDNGQSQNP TQYCAGSESP  180
CIAVRYTNYT IQFPYKYIIK GNQSSMNTVY DPMGHGTNMS EMGGCHVTTT SSNDGLPSWH  240
HNYSSTELLS AFMSSPTSFP LIKDIGDPSI STKQEQVESG TNFPQMPCRD EDLLKILDEM  300
TKMVNE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A2e-18194190MEF2 CHIMERA
6bz1_B2e-18194190MEF2 CHIMERA
6bz1_C2e-18194190MEF2 CHIMERA
6bz1_D2e-18194190MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5963062e-41JX596306.1 Gossypium hirsutum clone NBRI_GE32858 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488266.10.0PREDICTED: agamous-like MADS-box protein AGL8
SwissprotQ1PFC22e-60AGL66_ARATH; Agamous-like MADS-box protein AGL66
TrEMBLA0A0D2QYF90.0A0A0D2QYF9_GOSRA; Uncharacterized protein
STRINGGorai.007G242000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21792365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.18e-63AGAMOUS-like 66
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]