PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 302aa MW: 34081.9 Da PI: 5.5007

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G235200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.1	1.5e-18	52	105	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe +++++ ++ +LA++lgL rqV vWFqNrRa++k Gorai.007G235200.1 52 KKRRLNVDQVKALEKDFEVENKLDPGRKLKLAQQLGLRPRQVAVWFQNRRARWK 105 5568999**********************************************9 PP
2	HD-ZIP_I/II	123.7	9e-40	51	143	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ +qvk+LE+ Fe e+kL+p rK +la++Lgl+prqvavWFqnrRAR+ktkqlEkdy Lk++y++lk + ++L+++++ L +++ Gorai.007G235200.1 51 EKKRRLNVDQVKALEKDFEVENKLDPGRKLKLAQQLGLRPRQVAVWFQNRRARWKTKQLEKDYGLLKNRYETLKLNYDSLQHDNQVLLKQI 141 69*************************************************************************************9999 PP HD-ZIP_I/II 92 ke 93 +e Gorai.007G235200.1 142 EE 143 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.552	47	107	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.65E-18	50	109	IPR009057	Homeodomain-like
SMART	SM00389	3.3E-17	50	111	IPR001356	Homeobox domain
Pfam	PF00046	7.6E-16	52	105	IPR001356	Homeobox domain
CDD	cd00086	2.58E-14	52	108	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.4E-19	54	113	IPR009057	Homeodomain-like
PRINTS	PR00031	1.5E-5	78	87	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	82	105	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.5E-5	87	103	IPR000047	Helix-turn-helix motif
Pfam	PF02183	3.7E-14	107	148	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MKRVGSSHSL GAMMSICPIS DDNQIYSREF QSILDGLDEE EGVEESGYVA EKKRRLNVDQ 60 VKALEKDFEV ENKLDPGRKL KLAQQLGLRP RQVAVWFQNR RARWKTKQLE KDYGLLKNRY 120 ETLKLNYDSL QHDNQVLLKQ IEEVKAKLNG KNNVSVKEEV NVTKTANRTL EQSEAPVEVK 180 YESLKNNSKG SNGAILFLDL KDGSSDSDSS AVLNEDNNNG SNYVGGSSSG ILQSQHVWMS 240 PTTASSLNFN SSSSSSSMKC FQPQQFVKME EQNFFSADEA CKFFSDEEAP SLHWYCPEHW 300 N*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	107	RRARWKTKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012492121.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-6-like
Refseq	XP_012492122.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-6-like
TrEMBL	A0A0D2PE17	0.0	A0A0D2PE17_GOSRA; Uncharacterized protein
STRING	Gorai.007G235200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM545	28	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	1e-56	homeobox protein 16

Link Out ? help Back to Top
Phytozome	Gorai.007G235200.1
Entrez Gene	105804177

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]