PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G233800.1

Common Name

B456_007G233800, LOC105804157

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ZF-HD

Protein Properties

Length: 255aa MW: 28567.9 Da PI: 7.1534

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G233800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	104.7	5.9e-33	51	105	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 k rY+eClkNhA+ +GghavDGCgEfmp+ g egt +alkCaAC+CHRnFHR+e+e Gorai.007G233800.1 51 KPRYRECLKNHAVGIGGHAVDGCGEFMPA-GIEGTLDALKCAACNCHRNFHRKETE 105 779***********************9.999******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.3E-29	53	104	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	5.0E-23	53	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.0E-30	53	103	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.172	54	103	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.14E-18	163	234	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.6E-31	163	235	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.4E-25	176	233	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MEFEDQEEQE EEMGLAPSYD PLANSSRVKM SGVEPGSITP TGQQQQQQQR KPRYRECLKN 60 HAVGIGGHAV DGCGEFMPAG IEGTLDALKC AACNCHRNFH RKETELGSPH SVPMTDLYFH 120 HPHHQPPQFT PYFRPPTGCL HMAGQQRPLA LPSISGGGGG HSREDQDDVS NQGSSRKRFR 180 TKFTQEQKEK MLALAERLGW RIQKQDEAIV QQFCNETGVK RHVFKVWMHN NKNTLDNGAL 240 RQSGDMQCNT MQEA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	5e-27	177	234	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012492104.1	0.0	PREDICTED: zinc-finger homeodomain protein 2-like isoform X1
Swissprot	Q6YXH5	2e-76	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A0D2SIQ6	0.0	A0A0D2SIQ6_GOSRA; Uncharacterized protein
STRING	Gorai.007G233800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4505	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	2e-68	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Gorai.007G233800.1
Entrez Gene	105804157

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]