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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G229900.1 | ||||||||
Common Name | B456_007G229900, LOC105804106 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 350aa MW: 39689.7 Da PI: 4.828 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.7 | 7.7e-12 | 180 | 223 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Gorai.007G229900.1 180 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 223 589*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.491 | 174 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.5E-15 | 177 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.3E-12 | 180 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-9 | 180 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-14 | 181 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.17E-4 | 181 | 227 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MELSQHAFLE ELLAPRRDSW TTFSAGVTEF LPNGSWNFDS FDENPTLATS NLSFVAFSPP 60 PPPDQTPSFE CPFSDQPYPF VDGFTVRDMD SSYTNVNVVH PHTSPFSATQ QDFPSMVDDE 120 DQFGLLTTDH QQHRLEETKS SCKVEIEQTS NIQGFNMGDL LLGRKRAKTK KLEGQPSKNL 180 MAERRRRKRL NDRLSMLRSI VPKISKMDRT SILGDTIDYM KELLERINKL QEEDTKEGII 240 INQQSLLKNL KEQKPDEVLV RNSPKFDVER RDTDTRIDIC CATKPGLLLS TVNTLEALGL 300 EIQQCVISCF NEFSMQASCS EVEEQRTLIS SEDIKQALFR NAGYGGRCL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 182 | 189 | ERRRRKRL |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012492056.1 | 0.0 | PREDICTED: transcription factor bHLH61-like | ||||
Swissprot | Q9LSL1 | 1e-87 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A0D2SIK7 | 0.0 | A0A0D2SIK7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G229900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2043 | 28 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 5e-90 | beta HLH protein 93 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G229900.1 |
Entrez Gene | 105804106 |