PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G229000.1

Common Name

B456_007G229000, LOC105804092

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 329aa MW: 36997.8 Da PI: 6.0562

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G229000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.7	8.7e-13	152	198	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L l+P + kK++Ka++L A++Y+k+Lq Gorai.007G229000.1 152 DHVIAERKRREKLSQRFISLSALIPGL-----KKNDKASVLGDAIKYLKQLQ 198 6999*********************.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.983	148	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-10	152	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.4E-15	152	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.51E-16	153	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.29E-11	153	201	No hit	No description
SMART	SM00353	2.1E-13	154	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MEIASAKWLS ELEMEDPTLF PQYPTMNPID FSFDDFNFES FSPESYTSYT NIDHSHGLHI 60 EASHNVGDDD FRRPMKQLKT SSSNWKSSCI TDNIPPKAAS SSSSHIISFD NSNSSPPDIS 120 QHYCGLDRDL KRKNEVSKRV GSSTRAPLYA QDHVIAERKR REKLSQRFIS LSALIPGLKK 180 NDKASVLGDA IKYLKQLQER VGTLENQVAT KTMESVIIVR KTQIYSDDET SSCGENFESQ 240 SNNPFPEIEA RVSEKDVLIR IHCEKNKGCI PNIINEVEKL HLCVLNTNVL PFGQATLDIT 300 IVAQMEADFS MTVKDLVKSL RLALLNFM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	156	161	ERKRRE
2	157	162	RKRREK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012492041.1	0.0	PREDICTED: transcription factor bHLH19-like isoform X2
TrEMBL	A0A0D2SIJ1	0.0	A0A0D2SIJ1_GOSRA; Uncharacterized protein
STRING	Gorai.007G229000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM492	27	146

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	5e-67	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.007G229000.1
Entrez Gene	105804092

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]