PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G225400.2

Common Name

B456_007G225400, LOC105804055

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 291aa MW: 33194.5 Da PI: 7.5381

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G225400.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.3	3e-06	42	65	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg++F +++ L++H + H Gorai.007G225400.2 42 YVCKVCGRRFYTNEKLVNHFKQiH 65 9******************98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.32E-5	40	68	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.2E-5	41	68	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0026	42	65	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	12.071	42	70	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	44	65	IPR007087	Zinc finger, C2H2
CDD	cd06167	9.09E-14	59	194	No hit	No description
Gene3D	G3DSA:3.40.50.1000	0.001	92	186	IPR023214	HAD-like domain
Pfam	PF01936	1.3E-6	114	197	IPR021139	NYN domain, limkain-b1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005739	Cellular Component	mitochondrion
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MVAYANQHSF SYVPKAVREQ RRERKLLNQL ENKGVIKSID PYVCKVCGRR FYTNEKLVNH 60 FKQIHEREHQ KRVNQIESAR GSRRVKLVGK YSMKMEKYKN AAREVLTPKV GYGLADELKR 120 AGFWVGTVSN RPQAADVALR DHMVDVMDKR KAECLMLVSD DSDFVGVLKE AKLRCLKTVV 180 VGDADDGALK RVADAGFSWT EILKGKAKKE AVSVVGKWKD RDILKKLEWT YDPEVERKLY 240 GSEDMFDDES EDLDFDGSDD GNSSDYIHKE DSGAWWELDT ESDPDSSKSQ *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012492000.1	0.0	PREDICTED: uncharacterized protein LOC105804055
Refseq	XP_012492001.1	0.0	PREDICTED: uncharacterized protein LOC105804055
TrEMBL	A0A0D2PDM0	0.0	A0A0D2PDM0_GOSRA; Uncharacterized protein
TrEMBL	A0A0D2QXQ9	0.0	A0A0D2QXQ9_GOSRA; Uncharacterized protein
STRING	Gorai.007G225400.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12240.1	1e-127	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Gorai.007G225400.2
Entrez Gene	105804055

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]