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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G225400.1 | ||||||||
Common Name | B456_007G225400, LOC105804055 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 377aa MW: 42730.5 Da PI: 8.9005 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.9 | 4.2e-06 | 128 | 151 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg++F +++ L++H + H Gorai.007G225400.1 128 YVCKVCGRRFYTNEKLVNHFKQiH 151 9******************98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.1010 | 2.3E-8 | 45 | 131 | IPR029060 | PIN domain-like |
SuperFamily | SSF57667 | 1.98E-5 | 126 | 154 | No hit | No description |
SMART | SM00355 | 0.0026 | 128 | 151 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.071 | 128 | 156 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 130 | 151 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.8E-5 | 132 | 154 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
CDD | cd06167 | 5.94E-14 | 145 | 280 | No hit | No description |
Pfam | PF01936 | 7.5E-7 | 200 | 283 | IPR021139 | NYN domain, limkain-b1-type |
Gene3D | G3DSA:3.40.50.1010 | 2.3E-8 | 213 | 280 | IPR029060 | PIN domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MLHLFPSINN SVQSIRFKTL NPCISLSRLC HFKAKRGFDS LNQTSSVQNS VAVFWDLDNK 60 PPNAFPPFEA VVKLKTAASS FGVVRSMVAY ANQHSFSYVP KAVREQRRER KLLNQLENKG 120 VIKSIDPYVC KVCGRRFYTN EKLVNHFKQI HEREHQKRVN QIESARGSRR VKLVGKYSMK 180 MEKYKNAARE VLTPKVGYGL ADELKRAGFW VGTVSNRPQA ADVALRDHMV DVMDKRKAEC 240 LMLVSDDSDF VGVLKEAKLR CLKTVVVGDA DDGALKRVAD AGFSWTEILK GKAKKEAVSV 300 VGKWKDRDIL KKLEWTYDPE VERKLYGSED MFDDESEDLD FDGSDDGNSS DYIHKEDSGA 360 WWELDTESDP DSSKSQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012492000.1 | 0.0 | PREDICTED: uncharacterized protein LOC105804055 | ||||
Refseq | XP_012492001.1 | 0.0 | PREDICTED: uncharacterized protein LOC105804055 | ||||
TrEMBL | A0A0D2QXQ9 | 0.0 | A0A0D2QXQ9_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G225400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11444 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12240.1 | 1e-149 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G225400.1 |
Entrez Gene | 105804055 |
Publications ? help Back to Top | |||
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