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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.007G222000.1 |
Common Name | B456_007G222000, LOC105804011 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
LBD |
Protein Properties |
Length: 233aa MW: 25518.1 Da PI: 8.5802 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.007G222000.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 101.2 | 9.9e-32 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86
+C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++
Gorai.007G222000.1 2 SCNGCRVLRKGCSESCILRPCLqwiesPEAQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLFEACGRTVNPVNGAVGLLWNGNWH 92
6****************************************************************************************** PP
DUF260 87 leqlkaelall 97
++q+++e++l+
Gorai.007G222000.1 93 VCQAAVETVLR 103
*****999876 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 233 aa
Download sequence Send
to blast |
MSCNGCRVLR KGCSESCILR PCLQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPESQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWNGN WHVCQAAVET VLRGGSLRSM PELMAPTPAS 120 DEASEATCTD MWKLRETSTN LNSNCRFSNS RSRVSPKRKR VEEEFKKLQP SDLDLGLTPS 180 FTGKRVTDNR RPGTPSMNSE ESVTTTCFES VFADQQGQGS RGTDKKLLKL FV*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JX584284 | 4e-66 | JX584284.1 Gossypium hirsutum clone NBRI_GE17552 microsatellite sequence. |