PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G206000.1
Common NameB456_007G206000, LOC105803831
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 215aa    MW: 25118.4 Da    PI: 6.5256
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G206000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.92e-1961115357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                         k++++++eql+ Le  F +++++  e++ ++A++lgL+ rqV vWFqNrRa++k+
  Gorai.007G206000.1  61 KKRKLNQEQLTLLELNFGNEHKLESERKDRIASELGLDPRQVAVWFQNRRARWKN 115
                         45689************************************************95 PP
2HD-ZIP_I/II115.24e-3761152293
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                         kkr+l++eq++lLE +F +e+kLe+erK ++a+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+ +++++ +++rLe+ev +L+e+l+
  Gorai.007G206000.1  61 KKRKLNQEQLTLLELNFGNEHKLESERKDRIASELGLDPRQVAVWFQNRRARWKNKKLEEEYSKLKSLHETVVLDKCRLESEVVKLKEQLS 151
                         9****************************************************************************************98 PP

         HD-ZIP_I/II  93 e 93 
                         e
  Gorai.007G206000.1 152 E 152
                         6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003899.7E-1659120IPR001356Homeobox domain
PROSITE profilePS5007116.00161116IPR001356Homeobox domain
SuperFamilySSF466891.03E-1661123IPR009057Homeodomain-like
CDDcd000868.77E-1561117No hitNo description
PfamPF000461.1E-1661115IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.6E-1963123IPR009057Homeodomain-like
PRINTSPR000313.3E-58796IPR000047Helix-turn-helix motif
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PRINTSPR000313.3E-596112IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MSQDYEMMTS QMNEHEDHIA LISQIYPGFY TQIATHQGEP KPRRRRKKNK GGENSQWAVA  60
KKRKLNQEQL TLLELNFGNE HKLESERKDR IASELGLDPR QVAVWFQNRR ARWKNKKLEE  120
EYSKLKSLHE TVVLDKCRLE SEVVKLKEQL SEAEKEIQQL TERVDGVSSK CTSSSVLSME  180
AIDPVFHGEF GYEDVFYIGE NNYVLGMEWM NLFM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14563RKKNKGGENSQWAVAKKRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012491697.11e-160PREDICTED: homeobox-leucine zipper protein ATHB-40-like
SwissprotO232088e-72ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A0D2TIR81e-158A0A0D2TIR8_GOSRA; Uncharacterized protein
STRINGGorai.007G206000.11e-159(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22082677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-49homeobox protein 40
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]