PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G197200.1
Common NameB456_007G197200, LOC105803742
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 1432aa    MW: 156930 Da    PI: 5.8568
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G197200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.29.3e-0614081431226
                          -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                          ++++C+ f+++G+Ck G+ C++ H+
  Gorai.007G197200.1 1408 GQRICK-FYESGYCKKGAACRYWHP 1431
                          6899**.8899***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.103.9E-964124IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579031.99E-864123IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.52969135IPR019787Zinc finger, PHD-finger
CDDcd155688.98E-1971116No hitNo description
SMARTSM002496.7E-771117IPR001965Zinc finger, PHD-type
PROSITE patternPS01359072132IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.245.103.2E-23292372IPR003121SWIB/MDM2 domain
SuperFamilySSF475926.32E-20292368IPR003121SWIB/MDM2 domain
PfamPF022017.5E-15301367IPR003121SWIB/MDM2 domain
SMARTSM001519.8E-4303372IPR019835SWIB domain
PROSITE profilePS5136023.943429561IPR004343Plus-3 domain
SMARTSM007193.5E-42429538IPR004343Plus-3 domain
SuperFamilySSF1590422.35E-30430558IPR004343Plus-3 domain
PfamPF031268.3E-23434536IPR004343Plus-3 domain
SuperFamilySSF552773.53E-16688745IPR003169GYF domain
PROSITE profilePS5082915.09691745IPR003169GYF domain
CDDcd000725.61E-17691748No hitNo description
SMARTSM004447.7E-17692747IPR003169GYF domain
PfamPF022132.4E-12693737IPR003169GYF domain
Gene3DG3DSA:3.30.1490.403.0E-18693745IPR003169GYF domain
PROSITE profilePS5010314.39914061431IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.53E-614071430IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1432 aa     Download sequence    Send to blast
MDNSQLVGNV DVVVRGAAGA SAEAGNGVTV VEMSAGKRRR GRPPRNQVRT TSLSAPPPPP  60
QRKDEDDEED VCFICFDGGS LVLCDRRGCP KAYHPACIKR DEAFFKSKAK WNCGWHICST  120
CQKASYYMCY TCTYSLCKNC TKDADYLNVR GNKGFCGTCM RTIMLIENIA SENKEMVQVD  180
FDDKTSWEYL FKVYWVLLKE KLALSLDELT NAKNPWKETA IMGPKGHSSS ELNNYGNAKG  240
TNMEKSCGDQ GDSYSKRRKT TRQQKLLNNV EYLGAENSGV MKGVPFPGGT NWATTELLEF  300
VAHMKNGYVS VLSHFDVQAL LLEYITRNNL RDPRQKSHII CDSRLMKLFG KERVGHFEMI  360
KLLESHFLIQ DHSRAIDTVR GEPIEAAAIQ LAVDGNSDSQ PIIACDKRRK TRKKVNEKGQ  420
RANPDEYAAV DVHNMNLIYL KRNWIENLID DAEKIDGKVV GSFVRIKIPG NDQKQDFYRL  480
VQVVGTSKAE PYKIGERTTD IMLEILNLDK KEAVSINGIS NQEFTEDECQ RLYQRIRCGL  540
TKWFTVGEIL EKAMALQAVR VNDWLQSEIL RVTNLRDRAS EKGHMKEYRE CIEKLQLLNS  600
PDERQRRLQE IPDIHCDPDM NQYCKSLKVA VELEEKKENN KPRDSGFTMK EKEPAFALKG  660
SDDLNDIGSR GTSLGPHSTG MELTVNNIET DKIWHYQDPN GKVQGPFHIE MLRRWSMSGH  720
FPPDLRIWRA NEKQDNSILL TDALDGLYGE AKQSFCNSCV PTEDIRVASD DGCLSGAVDG  780
SGGTDLNVAQ IESKQVEGTL NSTLNDKSSH YCGNNESVKS TELSSQSSPC TATCTPVVDV  840
VNSGAVQKGS PLPTCDLVKG DNDLPGLPQV SSSVPSSTLS DKPCGTQSQQ FNNDHGVERW  900
DNGSINMGEN MDKTSEGQNI AGSAKLDDSE GKSGRSSGQS WRSSPLNDAS NGWDSNSGLI  960
SLARALEASE HSQDIDFSDI PTSTSKLNLE DSKGQANESK LSLSLNVPHR DSGPSWSTTS  1020
SLVGNSQIAE IVGEWGGHSS TPAKPSAKEW DSNIVRESSF KPSIMGSDHA AAPTSGSDQL  1080
THSSPPDPAN NAFAWDPIVP EPNEGDESVS DLLAEVEAME SLNGLTSPTS IMHCDGELAQ  1140
GSEPDCFSPV GRLSPAPDPG KSDAFSSTND LQMPSQSTVT TEPFRISQSE VLDAQKSSGR  1200
HSSTSAEINE NTRPRDVSVN QYKVGSNMQP PASPVTTWGM DTIDTAWRSG PETTSTNCGP  1260
VHGNKNFSWG GLGEGNTNVS RGTGQGTFQE NSSINAGTSG ENLAYWGSQQ RYVSPRHRDF  1320
QGRDSSSAGG SDFHGRDSSS ARGSDFQGKD SSSARGSDFQ GRDSSSARGS DFLGRDSSFA  1380
RGRSSSNRHS SYYGGSNGGG TFRSPTKGQR ICKFYESGYC KKGAACRYWH P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A2e-16691441587Histone-lysine N-methyltransferase NSD3
4gnd_C2e-16691441587Histone-lysine N-methyltransferase NSD3
4gne_A2e-16691441587Histone-lysine N-methyltransferase NSD3
4gnf_A2e-16691441587Histone-lysine N-methyltransferase NSD3
4gng_A2e-16691441587Histone-lysine N-methyltransferase NSD3
4gng_D2e-16691441587Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012491586.10.0PREDICTED: zinc finger CCCH domain-containing protein 44-like
TrEMBLA0A0D2SGM00.0A0A0D2SGM0_GOSRA; Uncharacterized protein
STRINGGorai.007G197200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77872130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]