PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G194400.2 | ||||||||
Common Name | B456_007G194400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 240aa MW: 26939.3 Da PI: 4.8727 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.6 | 2.5e-09 | 10 | 59 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRd++N+ f eL +l ++ +K++K++iL +++ +k+L Gorai.007G194400.2 10 RKVQKADREKLRRDKLNEQFVELGNMLDPD----RPKNDKVTILVDTTQMLKDL 59 5677889********************997....79***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.652 | 9 | 59 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.66E-12 | 10 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.75E-7 | 10 | 63 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.8E-11 | 10 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.5E-7 | 10 | 59 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.5E-5 | 15 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MEANDPIAAR KVQKADREKL RRDKLNEQFV ELGNMLDPDR PKNDKVTILV DTTQMLKDLT 60 VEVNRLRAEC SSLTEESREL SQEKNELREE KASLKADIEN LNIQYQQRLS VMFPWTGIEP 120 SVVVAPPYSY PAPLHVPTGP IAMHPSLQPY PYFLNHGPGA VANPCSTYIP YSMEQPSSQP 180 TSSSHLSFQR DCRGKPMDDQ GGSNRDSCDG SNDVVTELEL KIPGSSTNQV YFINLYPWL* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016696640.1 | 1e-167 | PREDICTED: transcription factor bHLH121-like | ||||
Swissprot | Q9LT23 | 8e-68 | BH121_ARATH; Transcription factor bHLH121 | ||||
TrEMBL | A0A0D2PC02 | 1e-178 | A0A0D2PC02_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G194400.1 | 1e-170 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19860.1 | 3e-69 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G194400.2 |
Publications ? help Back to Top | |||
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