PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G157700.2

Common Name

B456_007G157700

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 530aa MW: 57664.8 Da PI: 9.0584

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G157700.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.3	6.8e-09	350	397	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+ l+P + +k Ka +L + ++Y++sLq Gorai.007G157700.2 350 SHSLAERVRREKISERMKLLQNLVPGC----NKVTGKALMLDEIINYVQSLQ 397 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.65E-10	344	401	No hit	No description
SuperFamily	SSF47459	8.24E-17	344	415	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.428	346	396	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-16	346	414	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.4E-6	350	397	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.2E-10	352	402	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence Send to blast
MENQFFVNAG IPSPAPPLHF GSSMPMSDWQ SLSSAMEIQS QDCFPTPNWE KPTDYGLQFE 60 SALSSMVSSR AASNCNVSSE SLIIRELIGK LGSIGNGGEI PPHSQPLLAS YINGNNSSNT 120 SCYSTPLNSP PKLNLPMVDS LVKEKLPPKG LNSSVADFSA DPGFAERAAK FSCFGSRSFN 180 GRTTQFGPKD NTEFAAFRSN PLAANAKLPR VSSSPSIKAM VSQGTTTNKN TPLQDRSELA 240 NSQEESIVSE QNPNGEPGLK ASNSRKRKAV PKAKTKETSS SPSANASKVT EPNEASNEKR 300 CKLSDSNGNE NGSAKAEEDA KGDKANNTKA LEPPKDYIHV RARRGQATDS HSLAERVRRE 360 KISERMKLLQ NLVPGCNKVT GKALMLDEII NYVQSLQRQV EFLSMKLASV NTRLDFNVES 420 LMSKDIFQRN NTLQQPIFAI NSSASTFFGH QPQQNPALHS NMSNGTMTQC SVDPLDTAIC 480 PKLNTHLPQI NQFVETVPPQ VNIIFIANQS SLSLILFHFQ RSKRLNLLV*

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence Send to blast

MENQFFVNAG IPSPAPPLHF GSSMPMSDWQ SLSSAMEIQS QDCFPTPNWE KPTDYGLQFE  60
SALSSMVSSR AASNCNVSSE SLIIRELIGK LGSIGNGGEI PPHSQPLLAS YINGNNSSNT  120
SCYSTPLNSP PKLNLPMVDS LVKEKLPPKG LNSSVADFSA DPGFAERAAK FSCFGSRSFN  180
GRTTQFGPKD NTEFAAFRSN PLAANAKLPR VSSSPSIKAM VSQGTTTNKN TPLQDRSELA  240
NSQEESIVSE QNPNGEPGLK ASNSRKRKAV PKAKTKETSS SPSANASKVT EPNEASNEKR  300
CKLSDSNGNE NGSAKAEEDA KGDKANNTKA LEPPKDYIHV RARRGQATDS HSLAERVRRE  360
KISERMKLLQ NLVPGCNKVT GKALMLDEII NYVQSLQRQV EFLSMKLASV NTRLDFNVES  420
LMSKDIFQRN NTLQQPIFAI NSSASTFFGH QPQQNPALHS NMSNGTMTQC SVDPLDTAIC  480
PKLNTHLPQI NQFVETVPPQ VNIIFIANQS SLSLILFHFQ RSKRLNLLV*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00660	PBM	Transfer from Pp3c6_9520	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012490903.1	0.0	PREDICTED: transcription factor bHLH62 isoform X2
TrEMBL	A0A0D2P9Z8	0.0	A0A0D2P9Z8_GOSRA; Uncharacterized protein
STRING	Gorai.007G157700.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-118	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.007G157700.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]