PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G157700.1 | ||||||||
Common Name | B456_007G157700, LOC105803325 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 546aa MW: 59364.4 Da PI: 7.7508 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.2 | 7e-09 | 350 | 397 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+ l+P + +k Ka +L + ++Y++sLq Gorai.007G157700.1 350 SHSLAERVRREKISERMKLLQNLVPGC----NKVTGKALMLDEIINYVQSLQ 397 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.64E-17 | 344 | 415 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.24E-10 | 344 | 401 | No hit | No description |
PROSITE profile | PS50888 | 15.428 | 346 | 396 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-16 | 346 | 414 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.6E-6 | 350 | 397 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.2E-10 | 352 | 402 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 546 aa Download sequence Send to blast |
MENQFFVNAG IPSPAPPLHF GSSMPMSDWQ SLSSAMEIQS QDCFPTPNWE KPTDYGLQFE 60 SALSSMVSSR AASNCNVSSE SLIIRELIGK LGSIGNGGEI PPHSQPLLAS YINGNNSSNT 120 SCYSTPLNSP PKLNLPMVDS LVKEKLPPKG LNSSVADFSA DPGFAERAAK FSCFGSRSFN 180 GRTTQFGPKD NTEFAAFRSN PLAANAKLPR VSSSPSIKAM VSQGTTTNKN TPLQDRSELA 240 NSQEESIVSE QNPNGEPGLK ASNSRKRKAV PKAKTKETSS SPSANASKVT EPNEASNEKR 300 CKLSDSNGNE NGSAKAEEDA KGDKANNTKA LEPPKDYIHV RARRGQATDS HSLAERVRRE 360 KISERMKLLQ NLVPGCNKVT GKALMLDEII NYVQSLQRQV EFLSMKLASV NTRLDFNVES 420 LMSKDIFQRN NTLQQPIFAI NSSASTFFGH QPQQNPALHS NMSNGTMTQC SVDPLDTAIC 480 PKLNTHLPQI NQFVETVPPQ YPTFCEGDLE TIVHMGFGQN QSQDMALHSQ NFQGSNQVSH 540 MKVEL* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00660 | PBM | Transfer from Pp3c6_9520 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012490903.1 | 0.0 | PREDICTED: transcription factor bHLH62 isoform X2 | ||||
TrEMBL | A0A0D2SKX5 | 0.0 | A0A0D2SKX5_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G157700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2332 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 1e-133 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G157700.1 |
Entrez Gene | 105803325 |
Publications ? help Back to Top | |||
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