PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G151900.1 | ||||||||
Common Name | B456_007G151900, LOC105803263 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 555aa MW: 60616.1 Da PI: 7.1971 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48.4 | 1.6e-15 | 358 | 404 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L A++Y+ksLq Gorai.007G151900.1 358 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDDAIDYLKSLQ 404 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.31E-20 | 352 | 420 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.987 | 354 | 403 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.32E-16 | 357 | 408 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.4E-21 | 358 | 412 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.1E-13 | 358 | 404 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.8E-17 | 360 | 409 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 555 aa Download sequence Send to blast |
MNHCVPDFKM EDDYAIFLSP SSLTRVEKPP SRPEDEIMEL LWQNGQVVMQ SQNQRSMKKL 60 PSFKLLDADH SAPREIRSSS PSHKHRRHHH QEQQQLLTDH LFMQEDEMAS WLHYPISDAN 120 FDHDFCTDLL YPPSSSPTAA VAPCMSSTVA TSTPPILKRV SQVSVSASAK ESVPRPPVPP 180 ARRNELEPAR IHNFSHFSRH ITARTEQSEL SNSKNVMGES TVVDSSNTPA AAPESRAAQV 240 MPSNTEAASG GNNNNNNNAN ANMSAAGVPY LQSADVRLGA NKDSLATCEV TVTSSPGGSS 300 ASAEPTAQKA ASAEDRKRKG RELDEAECHS ENAEFESADT KKQTRGSTSA KRSRAAEVHN 360 LSERRRRDRI NEKMRALQEL IPRCNKSDKA SMLDDAIDYL KSLQMQVQMM SMGCGMVPMF 420 PGVQQYISPM GIGMSMGMDM GIIRPMMSFP NVVAGSALPT SAAAAHLGPR IPMPAFHMPP 480 SVPAPDPSGF QPSNQSDPIP NPLVMQNLNQ AQQYIGLHQT MQIPHPQGQA MAQPSSRRGA 540 EKVENHPTGR SISF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 362 | 367 | ERRRRD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX616197 | 0.0 | JX616197.1 Gossypium hirsutum clone NBRI_GE60666 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012490791.1 | 0.0 | PREDICTED: transcription factor PIF1-like isoform X1 | ||||
TrEMBL | A0A0D2SKE3 | 0.0 | A0A0D2SKE3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G151900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7108 | 26 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20180.3 | 3e-59 | phytochrome interacting factor 3-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G151900.1 |
Entrez Gene | 105803263 |
Publications ? help Back to Top | |||
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