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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G147300.3 | ||||||||
Common Name | B456_007G147300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 210aa MW: 24068 Da PI: 6.9125 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 102.3 | 6.3e-32 | 12 | 92 | 49 | 128 |
NAM 49 kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++k + +ewyfFs rd+kyatg r+nrat+sgyWkatgkd+ vl+ ++e+vg++ktLvfy++rap+g+kt W+mhe+rl Gorai.007G147300.3 12 EAAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRMVLDPtTEEVVGMRKTLVFYRNRAPNGVKTGWIMHEFRL 92 44555789**************************************977888***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 39.528 | 1 | 111 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.15E-40 | 9 | 111 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.9E-16 | 19 | 92 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MGLIGDLIKL TEAAKLNANE WYFFSFRDRK YATGFRTNRA TTSGYWKATG KDRMVLDPTT 60 EEVVGMRKTL VFYRNRAPNG VKTGWIMHEF RLHTPHLPPK EEWVLCRVFH KSKEENSAKL 120 SSPMMLETSS THHAHETAYQ HISSLSTTTP TYQSHAQCLL NLLQYNSHQE NNSNEVSSKV 180 DDGYEFLWDM EENSLECSWG GFQLGGHEI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-28 | 10 | 111 | 62 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-28 | 10 | 111 | 62 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-28 | 10 | 111 | 62 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-28 | 10 | 111 | 62 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-28 | 10 | 111 | 65 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-28 | 10 | 111 | 65 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-28 | 10 | 111 | 65 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-28 | 10 | 111 | 65 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-28 | 10 | 111 | 65 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-28 | 10 | 111 | 65 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-28 | 10 | 111 | 65 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-28 | 10 | 111 | 65 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-28 | 10 | 111 | 62 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-28 | 10 | 111 | 62 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847217 | 0.0 | KC847217.1 Gossypium hirsutum NAC domain protein NAC40 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001314147.1 | 1e-149 | protein CUP-SHAPED COTYLEDON 3-like | ||||
Refseq | XP_012490707.1 | 1e-149 | PREDICTED: protein CUP-SHAPED COTYLEDON 3-like | ||||
TrEMBL | A0A0D2P923 | 1e-157 | A0A0D2P923_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G147300.1 | 1e-148 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 3e-61 | NAC domain containing protein 74 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G147300.3 |
Publications ? help Back to Top | |||
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