PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 260aa MW: 29478.8 Da PI: 6.1673

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G146200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.9	1.2e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+++++++G g+W++ ++ g+ R++k+c++rw +yl Gorai.007G146200.1 14 KGPWTPEEDQILINYIQLHGHGNWRALPKQAGLLRCGKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	51.9	1.8e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l Gorai.007G146200.1 67 RGNFTREEEDTIINLHEMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.7E-27	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.159	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.35E-31	10	108	IPR009057	Homeodomain-like
SMART	SM00717	2.4E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-17	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	9.81E-12	16	61	No hit	No description
PROSITE profile	PS51294	25.219	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-26	65	117	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-14	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.2E-15	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	4.14E-10	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MVRAPCCEKM GLKKGPWTPE EDQILINYIQ LHGHGNWRAL PKQAGLLRCG KSCRLRWTNY 60 LRPDIKRGNF TREEEDTIIN LHEMLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLKHSH 120 GSNANNRQPI DPSKDIKREQ QPVTIYSQVS PPQSSSDVST SENNSNTNTS TTKTETNEDV 180 SEIDENFWSE VLSADNSSME ANFRVVGSDQ YFPSSPPPSL PALETVNGYG SNLYDTDANM 240 DFWYILFTRA ADLPELPEF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	7e-27	12	116	5	108	B-MYB
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Fades out in old roots and leaves. {ECO:0000269\|PubMed:24415840}.
Uniprot	TISSUE SPECIFICITY: Expressed in imbibed seeds, hypocotyls, cotyledons, roots, seedlings, siliques and flowers. {ECO:0000269\|PubMed:24415840}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269\|PubMed:24415840}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:24415840}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX591528	5e-66	JX591528.1 Gossypium hirsutum clone NBRI_GE26674 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012490695.1	0.0	PREDICTED: myb-related protein Myb4-like
Swissprot	Q9SJX8	3e-85	MYB14_ARATH; Transcription factor MYB14
TrEMBL	A0A0D2TEZ0	0.0	A0A0D2TEZ0_GOSRA; Uncharacterized protein
STRING	Gorai.007G146200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	3e-81	myb domain protein 14

Link Out ? help Back to Top
Phytozome	Gorai.007G146200.1
Entrez Gene	105803204

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Chen Y, et al. AtMYB14 Regulates Cold Tolerance in Arabidopsis. Plant Mol. Biol. Rep., 2013. 31: p. 87-97 [PMID:24415840]