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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G144000.1 | ||||||||
Common Name | B456_007G144000, LOC105803177 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 183aa MW: 20690.4 Da PI: 5.7498 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.00019 | 33 | 55 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H++ H Gorai.007G144000.1 33 YECVFCKRGFTTAQALGGHMNIH 55 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.02E-6 | 30 | 59 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.9E-4 | 31 | 59 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.99 | 33 | 60 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 35 | 55 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
METNHQHEDS KSSSEESDRS EQSNDDVGSG RSYECVFCKR GFTTAQALGG HMNIHRKDRA 60 KSSRPNSVPI VSGKVDDENY ASLRSSSSYL PIIQSYQPHY VSYQAFFPAS SGWDFRPPHP 120 PHGDELFVNN SSRYLNPFRE EDWPRNLNLR IGPSHVDENK KIDHGSSQDD ELDLELRLGH 180 DP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012490668.1 | 1e-133 | PREDICTED: zinc finger protein KNUCKLES-like isoform X1 | ||||
TrEMBL | A0A0D2P8X6 | 1e-132 | A0A0D2P8X6_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G144000.1 | 1e-133 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15373 | 7 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17810.1 | 2e-15 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G144000.1 |
Entrez Gene | 105803177 |
Publications ? help Back to Top | |||
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