PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G142800.1

Common Name

B456_007G142800, LOC105803167

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 337aa MW: 37263.1 Da PI: 10.0119

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G142800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.7	3.6e-31	271	328	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ e+p+++++tYegeHnh+ Gorai.007G142800.1 271 DDYSWRKYGQKPIKGSPHPRGYYKCSSIrGCPARKHVERCLEEPSMLIVTYEGEHNHP 328 99*********************9988**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	3.7E-18	222	267	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.7E-33	257	329	IPR003657	WRKY domain
PROSITE profile	PS50811	29.953	264	330	IPR003657	WRKY domain
SuperFamily	SSF118290	3.14E-27	267	329	IPR003657	WRKY domain
SMART	SM00774	1.6E-37	269	329	IPR003657	WRKY domain
Pfam	PF03106	6.2E-27	271	328	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MEEVEEANKA AIESSHRVLS ILSQPQDEVS YRHLMAETGE AVFRFKRVVS LLNSGLGHAR 60 VRKLRKLQAP FPQSTLLDTP HCNSSASDYP SKNLHLGCHE SSVQELTSHA KKSLYLGNPS 120 LELSSNGKHP LQLSQKASLG HYHFLQKQHQ MKQQAEMMFR KSNSSGMNLN FDSSSCTPTM 180 SSTRSFLSSL SMDGSVTNLS GGGSAAFHLI GAHRSSDQSS QQKKCYGKAE DGSVKCGTSG 240 RCHCSKKRKH RVKRSIKVPA ISNKLADIPP DDYSWRKYGQ KPIKGSPHPR GYYKCSSIRG 300 CPARKHVERC LEEPSMLIVT YEGEHNHPRL PSQSTT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-20	262	331	7	75	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid. {ECO:0000269\|PubMed:11449049}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF669798	0.0	KF669798.1 Gossypium hirsutum WRKY transcription factor 47 (WRKY47) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012490657.1	0.0	PREDICTED: probable WRKY transcription factor 21 isoform X1
Refseq	XP_012490658.1	0.0	PREDICTED: probable WRKY transcription factor 21 isoform X2
Refseq	XP_012490659.1	0.0	PREDICTED: probable WRKY transcription factor 21 isoform X2
Swissprot	O04336	1e-117	WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBL	A0A0D2SD42	0.0	A0A0D2SD42_GOSRA; Uncharacterized protein
STRING	Gorai.007G142800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3567	28	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30590.1	1e-109	WRKY DNA-binding protein 21

Link Out ? help Back to Top
Phytozome	Gorai.007G142800.1
Entrez Gene	105803167

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]