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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G141800.1 | ||||||||
Common Name | B456_007G141800, LOC105803156 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 305aa MW: 32100.2 Da PI: 6.8976 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.2 | 7.9e-10 | 152 | 196 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a++L + v+Y+k L Gorai.007G141800.1 152 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 196 99***********************55......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.01E-15 | 145 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.12 | 147 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.6E-15 | 149 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.1E-7 | 152 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.5E-11 | 153 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MANNPNESPA DDFLEQILGL SHFAPTETGL AGPDGRLSGN ATTAGAPMLL QLSSGGGTGH 60 IGAIGGGGGG AFHGQVFPLG LSLEQGKGGF LKPEEASGSS KRFRNEVVDG RAFSVKNVFH 120 GQPVPATVAA GPHPPAMRPR VRARRGQATD PHSIAERLRR ERIAERIRAL QELVPSVNKT 180 DRAAMLDEIV DYVKFLRLQV KVLSMSRLGA AGAVAPLVTD LPLSSVEQDE SGEGGRSQPA 240 WEKWSNDGTE RQVAKLMEED VGAAMQFLQS KALCVMPISL ATAIYHTQSP DTSSVVKPET 300 NPPS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 156 | 161 | RLRRER |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012490640.1 | 0.0 | PREDICTED: transcription factor UNE12 isoform X1 | ||||
Swissprot | O22768 | 1e-133 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | A0A0D2P8Q4 | 0.0 | A0A0D2P8Q4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G141800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1611 | 28 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.2 | 1e-114 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G141800.1 |
Entrez Gene | 105803156 |
Publications ? help Back to Top | |||
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