PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G139800.2
Common NameB456_007G139800, LOC105803138
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 377aa    MW: 41981.3 Da    PI: 9.3565
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G139800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.1e-053153123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C++C+k F r  nL+ H r H
  Gorai.007G139800.2 31 FICEICNKGFQRDQNLQLHRRGH 53
                        89*******************88 PP
2zf-C2H212.60.0004107129123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k +  +s+ k H +t+
  Gorai.007G139800.2 107 WKCEKCSKIYAVQSDWKAHSKTC 129
                         58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.55E-63053No hitNo description
Gene3DG3DSA:3.30.160.609.3E-63053IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0223153IPR015880Zinc finger, C2H2-like
PfamPF121714.2E-53153IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.8453153IPR007087Zinc finger, C2H2
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
SMARTSM0035526072102IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-495128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.55E-6102127No hitNo description
SMARTSM00355170107127IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MKKKRSLPGN PDPDAEVIAL SPKTLLATNR FICEICNKGF QRDQNLQLHR RGHNLPWKLK  60
QRNSKEVKKK AYVCPEPTCV HHHPSRALGD LTGIKKHYCR KHGEKKWKCE KCSKIYAVQS  120
DWKAHSKTCG TREYRCDCGT LFSRKDSFIT HRAFCDALAE ESARLSANQL AAAANPALNP  180
SSLFPYQNPW DPIQTSNPNP NDPLQVKPES QHFTPYFQEP PLPPPKALFT SPFQSLHVSN  240
NPPSNAAATS ATPQLSATAL LQKATTVGAT ATQIKNNNYY YSMATHLSPD FSGFTAADLA  300
TWQKNSDRFT RDFLGLTRDH QGGNGNVNLS MNPRDVLSYT GGVELQHFER GQPLLRPQGF  360
GFPEPYAATS ETWGDC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-37103167367Zinc finger protein JACKDAW
5b3h_F9e-37103167367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4617241e-130AM461724.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X124416.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490609.10.0PREDICTED: protein indeterminate-domain 12-like
SwissprotO227591e-127IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A0D2SJN70.0A0A0D2SJN7_GOSRA; Uncharacterized protein
STRINGGorai.007G139800.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-122indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]