PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G136400.1
Common NameB456_007G136400, LOC105803102
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 662aa    MW: 74893.1 Da    PI: 4.975
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G136400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH443.9e-14461507455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Gorai.007G136400.1 461 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 507
                         7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.5E-569191IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.625457506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-19459525IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-11461506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.71E-14461511No hitNo description
Gene3DG3DSA:4.10.280.105.3E-19461524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-17463512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MAVPPSNRLR NMLQAAVQSV QWTYSLFWQI CPQQGILVWS DGYYNGAIKT RKTLQPMEVS  60
AEEAALQRSQ QLRELYDSLS AGESNQTVRR PSAALSPEDL TESEWFYLMC VSFSFPPGVG  120
LPGKAYARRQ HVWLTGASEV DSKIFSRAIL AKSARIQTVL CIAVHDGVVE LGTTEKLQED  180
LELVQHVKTF FTDDIIRNPK PALSEHSTSN PADYTRFHSP ALPPTYAAAN PNLDGNEEEE  240
EEEEEEEEEE EEEEEGPESD CAETDRNSRR MVRVAAEPSE LMMQLEMSED MRLGSPDDAS  300
NNLDTDIHMA GVSQAEKQRR AESFKAELCR RWEMVQEEEA ANSGLESRYS GLLPMDGLAQ  360
ENTHYSQTVS AILQGQPTRW ADSLPTYSTE SAFSKWTIRS DHHQLPVALE GASSQWLLKY  420
ILFSVPLLHS KYRDENSPKA RDADAAARFR KGTPQEELSA NHVLAERRRR EKLNERFIIL  480
RSLVPFVTKM DKASILGDTI EYVKQLRKKI QELETRNKEI EAHNERPRSA DSLQRSGVTV  540
SERARSLGPE PGREKRKMRI VTESRGEARP KKTQPETALE VSIIENDALL ELQCEYREGL  600
LVDIMRMLRE QLRIEITTVQ SSLNNGVLAA ELRAKVKDNV NGKKVSITEV KWAINQMIPS  660
F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-2371917192Transcription factor MYC3
4rqw_B3e-2371917192Transcription factor MYC3
4rru_A9e-23718746227Transcription factor MYC3
4rs9_A3e-2371917192Transcription factor MYC3
4ywc_A9e-23718746227Transcription factor MYC3
4ywc_B9e-23718746227Transcription factor MYC3
4yz6_A3e-2371917192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1465470ERRRRE
2466471RRRREK
3552558REKRKMR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6988730.0KP698873.1 Gossypium raimondii basic helix-loop-helix protein 130D (bHLH130D) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490555.10.0PREDICTED: basic helix-loop-helix protein A-like isoform X1
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A0D2QS790.0A0A0D2QS79_GOSRA; Uncharacterized protein
STRINGGorai.007G136400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94222836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-101bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]