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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G124800.2 | ||||||||
Common Name | B456_007G124800, LOC105802980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 181aa MW: 19596.2 Da PI: 9.9293 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.3 | 5.7e-05 | 47 | 69 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+++F ++ L H++ H Gorai.007G124800.2 47 FECPFCHRVFANSQALGGHQNAH 69 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.88E-6 | 44 | 74 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.2E-4 | 45 | 73 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.51 | 47 | 74 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 49 | 69 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MADSSIPARS SSPVKPSSSL KLFGFSLTDQ PDEVLEKAEG FGESRKFECP FCHRVFANSQ 60 ALGGHQNAHK RERQKARRAQ FHSQQRLIAS APVLSSHSLR PTFPRGFTGN AAAKIVSQPF 120 YCPSRPLLLP STPSQYPPRI YVAQPLHFAT AAPALTDFSG QLPEADIGLD LHLKLSPSGC 180 * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012490357.1 | 1e-128 | PREDICTED: zinc finger protein 6-like | ||||
TrEMBL | A0A0D2QRF5 | 1e-127 | A0A0D2QRF5_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G124800.1 | 1e-126 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06650.1 | 6e-13 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G124800.2 |
Entrez Gene | 105802980 |
Publications ? help Back to Top | |||
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