PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G124000.1
Common NameB456_007G124000, LOC105802964
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 381aa    MW: 43038.9 Da    PI: 4.4802
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G124000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.9e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +grWT+eEde+l ++++ +G g+W++ ++  g+ R++k+c++rw +yl
  Gorai.007G124000.1 14 KGRWTAEEDEILTKYIQTHGEGSWRLLPKNAGLLRCGKSCRLRWINYL 61
                        79******************************99************97 PP
2Myb_DNA-binding58.51.5e-1867111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg++T eEdell+++++ lG++ W++Ia++++ gRt++++k++w++ 
  Gorai.007G124000.1  67 RGNFTGEEDELLIKLHQSLGNR-WSLIASHLP-GRTDNEIKNYWNSN 111
                         89********************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.2E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.616961IPR017930Myb domain
SuperFamilySSF466891.8E-3011108IPR009057Homeodomain-like
SMARTSM007172.3E-131363IPR001005SANT/Myb domain
PfamPF002494.2E-151461IPR001005SANT/Myb domain
CDDcd001673.87E-101661No hitNo description
PROSITE profilePS5129425.62162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-2665116IPR009057Homeodomain-like
SMARTSM007172.7E-1866114IPR001005SANT/Myb domain
PfamPF002499.6E-1767111IPR001005SANT/Myb domain
CDDcd001674.80E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTAE EDEILTKYIQ THGEGSWRLL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNF TGEEDELLIK LHQSLGNRWS LIASHLPGRT DNEIKNYWNS NLSTKMYCFR  120
RLSNQSLPVI LNVTGRKGMK DNRGHSTKKE NNGNSSSNKP MEVFIDEVVP FLSTPSLEKE  180
TFPSAVEDSM HLDPYEEDNE RRIGVIPSSC QHTGDGDRYV ENSMLCPAAT DSVVEKETDI  240
FSLFGSTESS GMLCFDNILD NELLQTNGDS TLSRWGLNQV SVDLENSGDL CPNKPAAINK  300
QVESGDCGTG DLTSYFCTTS CFFDDCEVNN ILDWDWERNE LWDENECIMP SWLWELDYND  360
KDDRLTLENN DLELHGSAVA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-25121162105C-Myb DNA-Binding Domain
1msf_C2e-25121162105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490341.10.0PREDICTED: transcription factor MYB12-like
TrEMBLA0A0D2QRE20.0A0A0D2QRE2_GOSRA; Uncharacterized protein
STRINGGorai.007G124000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17349511
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.11e-70myb domain protein 111
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]