PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G118100.1 | ||||||||
Common Name | B456_007G118100, LOC105802905 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 559aa MW: 61942.2 Da PI: 7.724 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48 | 2.3e-15 | 379 | 426 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h+ ErrRRd+iN+++ L+el+P++ K++Ka++L +A++Y+k Lq Gorai.007G118100.1 379 ELHKLCERRRRDKINEKMRALQELIPNC-----NKVDKASMLDEAIDYLKTLQ 426 5699***********************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 7.0E-21 | 373 | 435 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-20 | 373 | 446 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.51E-16 | 374 | 430 | No hit | No description |
PROSITE profile | PS50888 | 17.841 | 376 | 425 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-12 | 380 | 426 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-16 | 382 | 431 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 559 aa Download sequence Send to blast |
MAEKPTPESI PRRITTPFPN LSSMCDPNFV EHAWENDQNL IRGLSSKIPK KNFPGSGYFS 60 QSSKARIQHE GETPTVNTSK HGVADSTSTY GDPLSSITKT NRLNHHHHEN YITSLQTGYR 120 ELLFEDGFNV ALEADQKCYD QQLLDSNIVP TNKYKNFKQS NVLDVPELVH EIPQQTMNND 180 SQLPQPQPET CIPFMRSKDK YSRIDEKSER ANFSIFLNSP ALPKSNQIPC CGVTIPRSTP 240 GLAVEEDDDL EANARSIPFA KEAKSMKPIL PDYEPEKEWV VPDEQSEAVG FNDNMRLPSS 300 RVGGTSSGLA PNTIMKGKVV EQKVASSSVC SRGASNCPVN TFERRYEDTD LSDNDELEEA 360 HETTKATPSK GSKRKRKSEL HKLCERRRRD KINEKMRALQ ELIPNCNKVD KASMLDEAID 420 YLKTLQLQVQ MMSMGTAGVY MPPMMLPASS MQHINARQLG GYSPMAMGMG MQMGLGCTTA 480 TQFPSVTSLM PGIMQARFNM LGLPRQVLLM SRSPFASLAA TFPPQSVRTT SVSQALAAVP 540 LSTSKDSNPA LQLKTRNA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 374 | 388 | KRKSELHKLCERRRR |
2 | 384 | 389 | ERRRRD |
3 | 385 | 390 | RRRRDK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX591159 | 1e-104 | JX591159.1 Gossypium hirsutum clone NBRI_GE26219 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012490264.1 | 0.0 | PREDICTED: uncharacterized protein LOC105802905 | ||||
TrEMBL | A0A0D2TDK0 | 0.0 | A0A0D2TDK0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G118100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16436 | 8 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 3e-36 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G118100.1 |
Entrez Gene | 105802905 |
Publications ? help Back to Top | |||
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