PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G117200.1
Common NameB456_007G117200, LOC105802892
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 506aa    MW: 54549.4 Da    PI: 8.0408
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G117200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.7e-31269327259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  Gorai.007G117200.1 269 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDKSILITTYEGNHNHP 327
                         7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-33253329IPR003657WRKY domain
SuperFamilySSF1182905.75E-28262329IPR003657WRKY domain
PROSITE profilePS5081129.964263329IPR003657WRKY domain
SMARTSM007742.4E-37268328IPR003657WRKY domain
PfamPF031066.6E-27270327IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MEKQLRRELR FLHSGDFPIQ DSGEPDGALD DSGDHVKPLI KEMDFFPNHN QSHDRHQGRK  60
IDNNNNPLSS LLDSEVNIGL NLLSSSSGVS RIANEEKPKA EISHAKIALE RLHEENRRLR  120
CTLGQITKSY KELQGQLFMA VQKLALGNQT EKKDAVNGTS SPIMSVPQFM DPRPSAALDV  180
NEPSASDDRT QDLSASPGKN MEVVSKEGEH QIPGKHASVE DGSDQTSQSW RPTKCPKLDH  240
SNKEEQVSEV PFRKARVSIR ARSEAPLISD GCQWRKYGQK MAKGNPCPRA YYRCTMAVGC  300
PVRKQVQRCA EDKSILITTY EGNHNHPLPP PATALANTTS AAAAMLLSGS TTSKDGLSLP  360
SFSYFPSLPY ASTMATSAAP FPIVTLDLTQ GPNTVPFLRP PPSAATFPLS VHGYPQILGH  420
SMLAPPKLSA VSAMQLWQRP VSMVETVTAA IASDPNFTTA LAAAISTIIG APKSNNGGNN  480
NSSNGVATLP ASPQLPQSCT TFSAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21255330175WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6698250.0KF669825.1 Gossypium hirsutum WRKY transcription factor 51 (WRKY51) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490253.10.0PREDICTED: probable WRKY transcription factor 47
TrEMBLA0A0D2TDI70.0A0A0D2TDI7_GOSRA; Uncharacterized protein
STRINGGorai.007G117200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71562743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.15e-60WRKY family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]