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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G114500.7 | ||||||||
Common Name | B456_007G114500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 361aa MW: 41206.1 Da PI: 5.8409 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 124.6 | 8.4e-39 | 44 | 174 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 G+rFhPtd el+++yL +k g++ + ++i+e+ di+ +ePw+Lp ++v ++++ wyfF + + ky++++r nr+t++g+Wk tgk + Gorai.007G114500.7 44 TGYRFHPTDFELLNYYLLNKNLGRDSLV-QAIAELeDICGLEPWQLPghSNVPSGDHVWYFFYRPSFKYQNSSRINRTTNEGFWKPTGKPR 133 7***********************9777.7788888***********5337778999********************************** PP NAM 91 evlsk.kgelvglkktLvfykg..rapkgektdWvmheyrl 128 ++++ ++ ++g k+tLvfykg ++++ kt W+mhey+l Gorai.007G114500.7 134 RIMAMdQDIEIGKKRTLVFYKGhvSDNTKMKTGWIMHEYEL 174 ***9856677**********98445666779********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-43 | 42 | 192 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 43.813 | 42 | 192 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.8E-22 | 44 | 174 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MRNKKGYHII HRIPNEERFS SYYCYYLFWV AVGYYLWKKI LTITGYRFHP TDFELLNYYL 60 LNKNLGRDSL VQAIAELEDI CGLEPWQLPG HSNVPSGDHV WYFFYRPSFK YQNSSRINRT 120 TNEGFWKPTG KPRRIMAMDQ DIEIGKKRTL VFYKGHVSDN TKMKTGWIMH EYELTATLPN 180 QTTFVLCKLK RKFGKAEVSC IDEGQSSHYL PPTLGNYIAN NANQAEAARC LTANSNPNEM 240 LTQLEALNDH EELEHQYIEL WNSYVGGDFP KHDGSGDFGT HGAENAIANH HLLTEIPMGQ 300 EVLQDQSGTN EQDISNLGEL GPGDERSNQH KLIMDDDGCN MPSNSENDAA EDSVKMTING 360 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-25 | 45 | 197 | 20 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-25 | 45 | 197 | 20 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-25 | 45 | 197 | 20 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-25 | 45 | 197 | 20 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-25 | 45 | 197 | 23 | 173 | NAC domain-containing protein 19 |
3swm_B | 7e-25 | 45 | 197 | 23 | 173 | NAC domain-containing protein 19 |
3swm_C | 7e-25 | 45 | 197 | 23 | 173 | NAC domain-containing protein 19 |
3swm_D | 7e-25 | 45 | 197 | 23 | 173 | NAC domain-containing protein 19 |
3swp_A | 7e-25 | 45 | 197 | 23 | 173 | NAC domain-containing protein 19 |
3swp_B | 7e-25 | 45 | 197 | 23 | 173 | NAC domain-containing protein 19 |
3swp_C | 7e-25 | 45 | 197 | 23 | 173 | NAC domain-containing protein 19 |
3swp_D | 7e-25 | 45 | 197 | 23 | 173 | NAC domain-containing protein 19 |
4dul_A | 6e-25 | 45 | 197 | 20 | 170 | NAC domain-containing protein 19 |
4dul_B | 6e-25 | 45 | 197 | 20 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847248 | 0.0 | KC847248.1 Gossypium hirsutum NAC domain protein NAC71 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001313995.1 | 0.0 | NAC domain-containing protein 86-like | ||||
Refseq | XP_012490211.1 | 0.0 | PREDICTED: NAC domain-containing protein 86-like | ||||
TrEMBL | A0A0D2P7E4 | 0.0 | A0A0D2P7E4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G114500.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03200.1 | 3e-31 | NAC domain containing protein 45 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G114500.7 |
Publications ? help Back to Top | |||
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