PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G113300.2

Common Name

B456_007G113300, LOC105802851

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 377aa MW: 42592.2 Da PI: 6.034

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G113300.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.7	4.9e-14	190	241	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++++k+L+ Gorai.007G113300.2 190 QRMTHIAVERNRRRQMNDYLNSLRSLMPPC---YIQRGDQASIIAGAIDFVKELE 241 79**************************...*****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.10E-12	188	245	No hit	No description
SuperFamily	SSF47459	6.94E-17	189	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.126	189	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-11	190	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.9E-15	190	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-11	195	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MFLGEHLEVE CLEQGFISCE RLKLGEEEEE EAHFSIPSFE EKMPFLQMLQ SVESPQLFAF 60 KEPNFQTLLR LQHMKKPWEL NTNPFIPEME TQVQALELES CVTHETVLDL HSPVKSETKE 120 LKKSPPSSSC AEVLSSGSNQ HQPKSDNCSG EPNLGSSPQK IFTKSPPITR ERRKRKRTKA 180 AKNKEEVESQ RMTHIAVERN RRRQMNDYLN SLRSLMPPCY IQRGDQASII AGAIDFVKEL 240 EQLLQSLEAQ KRTGKVHESN NSMSNPAMEI HQQEYENGSE DGHCGEEVKA ESKTGAAEVE 300 VNVIHNHVNL KIQCSRRAGQ LIQAIVTLET LRLTVLHLNI TTSRASVLYS FNLKMEDDSA 360 LRSADEIAAA VHQIFS*

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MFLGEHLEVE CLEQGFISCE RLKLGEEEEE EAHFSIPSFE EKMPFLQMLQ SVESPQLFAF  60
KEPNFQTLLR LQHMKKPWEL NTNPFIPEME TQVQALELES CVTHETVLDL HSPVKSETKE  120
LKKSPPSSSC AEVLSSGSNQ HQPKSDNCSG EPNLGSSPQK IFTKSPPITR ERRKRKRTKA  180
AKNKEEVESQ RMTHIAVERN RRRQMNDYLN SLRSLMPPCY IQRGDQASII AGAIDFVKEL  240
EQLLQSLEAQ KRTGKVHESN NSMSNPAMEI HQQEYENGSE DGHCGEEVKA ESKTGAAEVE  300
VNVIHNHVNL KIQCSRRAGQ LIQAIVTLET LRLTVLHLNI TTSRASVLYS FNLKMEDDSA  360
LRSADEIAAA VHQIFS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	171	176	RRKRKR
2	190	201	RMTHIAVERNRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012490190.1	0.0	PREDICTED: transcription factor bHLH67-like isoform X2
TrEMBL	A0A0D2TDA4	0.0	A0A0D2TDA4_GOSRA; Uncharacterized protein
STRING	Gorai.007G113300.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46810.1	5e-63	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.007G113300.2
Entrez Gene	105802851

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]