PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.007G113200.2 | ||||||||
Common Name | B456_007G113200, LOC105802850 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 335aa MW: 37897 Da PI: 7.9111 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.9 | 4.1e-14 | 148 | 199 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++++k+L+ Gorai.007G113200.2 148 QRMTHIAVERNRRRQMNDYLNSLRSLMPPC---YIQRGDQASIIAGAIDFVKELE 199 79****************************...*******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.87E-12 | 146 | 203 | No hit | No description |
SuperFamily | SSF47459 | 5.89E-17 | 147 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.126 | 147 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.9E-15 | 148 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-11 | 148 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-11 | 153 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MPFLQMLQSV ESPQLFAFKE PNFQTLLRLQ HMKKPWELNT NPFIPEMETQ VQALELESCV 60 THETVLDLHS PVKSETKELK KSPPSSSCVE VLSSGSNQHQ PKSDNCSREP NLGSSSQKIF 120 TKSPPITRER RKRKRTKAAK NKEEVESQRM THIAVERNRR RQMNDYLNSL RSLMPPCYIQ 180 RGDQASIIAG AIDFVKELEQ LLQSLEAQKR TRKVHESNNS MSNPAMEIHQ QEYENGSEDG 240 HCGEEVKAES KTGAAEVEVN VIHNHVNLKI QCSRRAGQLI QAIVTLETLR LTVLHLNITT 300 SRASVLYSFN LKMEDDSALR SADEIAAAVH QIFS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 129 | 134 | RRKRKR |
2 | 148 | 159 | RMTHIAVERNRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012490187.1 | 0.0 | PREDICTED: transcription factor bHLH67-like isoform X2 | ||||
TrEMBL | A0A0D2QQW5 | 0.0 | A0A0D2QQW5_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G113200.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46810.1 | 2e-60 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.007G113200.2 |
Entrez Gene | 105802850 |
Publications ? help Back to Top | |||
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